Installation of pyper gives me error code 1. I used pip install on my
ubuntu machine. How to install Pyper correctly?
Here is the debug log file:
------------------------------------------------------------
/usr/bin/pip run on Tue Apr 4 15:07:58 2017
Downloading/unpacking pyper
Getting page https://pypi.python.org/simple/pyper/
URLs to search for versions for pyper:
* https://pypi.python.org/simple/pyper/
YV Analyzing links from page https://pypi.python.org/simple/pyper/
Found link
https://pypi.python.org/packages/0f/46/47a5ebf039d1982a5cf7ed4f53ef1dcfccf57358566da973732cfc2ac31d/PypeR-1.1.1.tar.gz#md5=8f1708b06e1cdd73d3f03b4342c7c948
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/4f/c2/957c9eb9ced95cedd04e6330ac446485d6e48f2d198f21f30aba0fe637cc/PypeR-1.0.1.tar.gz#md5=fc05ad098ef370deb7fffee34497fa82
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/56/fa/d6d58ace212c2dac27c08fe03c603eede4f1190a46d11917946db74bd1e8/PypeR-1.1.0.tar.gz#md5=6a186b5399d75f32f0eb29275c7e01b3
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/6c/87/a19361e922311aa86697edcbd95f3af85c69240350836136c629b7b29b38/PypeR-1.0.2.tar.gz#md5=73dd5f4b5dac2bd0a29425853c8de125
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/7e/4d/8167a3f7b3897b15ac5c2424886579cefa852705ac4c925dbdb8740f8838/PypeR-1.0.tar.gz#md5=eb05aa5ccee55e5175ea8f36e2d42591
(from https://pypi.python.org/simpl$
Found link
https://pypi.python.org/packages/7f/44/4c063481bed01a9f18e34b823c796af7b8f59f458a8e67fd171263a96488/PypeR-1.0.3.tar.gz#md5=b8b9535e825d88dc6f15aff13c6e180c
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/e6/3e/4ed8b7c23333f7a1d3b18ecb37b09b4867fee95151a3a59c43c20376678e/PypeR-1.1.2.tar.gz#md5=d056a481a13d07300a5ffc6848b34d1e
(from https://pypi.python.org/sim$
Found link
https://pypi.python.org/packages/eb/5a/2991b67ad276c55234ffff04b77eeb9c30e01cbda9920c9da9b20d656dc2/PypeR-1.0.4.tar.gz#md5=40b0ccaa645c7b936cc25ce86527aba6
(from https://pypi.python.org/sim$
Using version 1.1.2 (newest of versions: 1.1.2, 1.1.1, 1.1.0, 1.0.4,
1.0.3, 1.0.2, 1.0.1, 1.0)
Downloading PypeR-1.1.2.tar.gz
Downloading from URL
https://pypi.python.org/packages/e6/3e/4ed8b7c23333f7a1d3b18ecb37b09b4867fee95151a3a59c43c20376678e/PypeR-1.1.2.tar.gz#md5=d056a481a13d07300a5ffc6848b34d1e
(from https://pypi.python$
Running setup.py (path:/tmp/pip_build_root/pyper/setup.py) egg_info for
package pyper
Traceback (most recent call last):
File "<string>", line 17, in <module>
File "/tmp/pip_build_root/pyper/setup.py", line 13, in
<module>
py_modules=['pyper'], # copy to site-packages
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File
"/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line 320, in __init__
_Distribution.__init__(self, attrs)
File "/usr/lib/python2.7/distutils/dist.py", line 287, in
__init__
self.finalize_options()
File
"/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line 386, in finalize_options
ep.require(installer=self.fetch_build_egg)
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line
2100,
in require
working_set.resolve(self.dist.requires(self.extras),env,installer)))
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line
620,
in resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line
858,
in best_match
return self.obtain(req, installer) # try and download/install
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line
870,
in obtain
return installer(requirement)
File
"/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line 416, in fetch_build_egg
from setuptools.command.easy_install import easy_install
File
"/usr/local/lib/python2.7/dist-packages/setuptools/command/easy_install.py",
line 51, in <module>
from setuptools.archive_util import unpack_archive
File
"/usr/local/lib/python2.7/dist-packages/setuptools/archive_util.py",
line
11, in <module>
from pkg_resources import ensure_directory, ContextualZipFile
ImportError: cannot import name ContextualZipFile
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 17, in <module>
File "/tmp/pip_build_root/pyper/setup.py", line 13, in
<module>
py_modules=['pyper'], # copy to site-packages
File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line
320, in __init__
_Distribution.__init__(self, attrs)
File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__
self.finalize_options()
File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line
386, in finalize_options
ep.require(installer=self.fetch_build_egg)
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2100,
in
require
working_set.resolve(self.dist.requires(self.extras),env,installer)))
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 620,
in
resolve
dist = best[req.key] = env.best_match(req, ws, installer)
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 858,
in
best_match
return self.obtain(req, installer) # try and download/install
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 870,
in
obtain
return installer(requirement)
File "/usr/local/lib/python2.7/dist-packages/setuptools/dist.py",
line
416, in fetch_build_egg
from setuptools.command.easy_install import easy_install
File
"/usr/local/lib/python2.7/dist-packages/setuptools/command/easy_install.py",
line 51, in <module>
from setuptools.archive_util import unpack_archive
File
"/usr/local/lib/python2.7/dist-packages/setuptools/archive_util.py",
line 11, in <module>
from pkg_resources import ensure_directory, ContextualZipFile
ImportError: cannot import name ContextualZipFile
----------------------------------------
Cleaning up...
Removing temporary dir /tmp/pip_build_root...
Command python setup.py egg_info failed with error code 1 in
/tmp/pip_build_root/pyper
Exception information:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line
122, in
main
status = self.run(options, args)
File "/usr/lib/python2.7/dist-packages/pip/commands/install.py",
line
278, in run
requirement_set.prepare_files(finder, force_root_egg_info=self.bundle,
bundle=self.bundle)
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 1230, in
prepare_files
req_to_install.run_egg_info()
File "/usr/lib/python2.7/dist-packages/pip/req.py", line 326, in
run_egg_info
command_desc='python setup.py egg_info')
File "/usr/lib/python2.7/dist-packages/pip/util.py", line 715, in
call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command python setup.py egg_info failed with error code
1 in /tmp/pip_build_root/pyper
-------------------------------------------
On Fri, Mar 31, 2017 at 1:35 PM, Wensui Liu <liuwensui at gmail.com>
wrote:
> In https://statcompute.wordpress.com/?s=rpy2, you can find examples of
> rpy2.
>
> In https://statcompute.wordpress.com/?s=pyper, you can find examples of
> pyper.
>
> On Fri, Mar 31, 2017 at 11:38 AM, Kankana Shukla <shukla.kank at
gmail.com>
> wrote:
> > I'm not great at rpy2. Are there any good examples I could see to
learn
> > how to do that? My R code is very long and complicated.
> >
> > On Fri, Mar 31, 2017 at 7:08 AM, Stefan Evert <stefanML at
collocations.de>
> > wrote:
> >
> >>
> >> > On 30 Mar 2017, at 23:37, Kankana Shukla <shukla.kank at
gmail.com>
> wrote:
> >> >
> >> > I have searched for examples using R and Python together, and
rpy2
> seems
> >> > like the way to go, but is there another (easier) way to do
it?
> >>
> >> Rpy2 would seem to be a very easy and convenient solution. What
do you
> >> need that can't easily be down with rpy2?
> >>
> >> Best regards,
> >> Stefan
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]