G.Maubach at weinwolf.de
2016-Jun-29 14:48 UTC
[R] Antwort: Re: Antwort: Re: Installing from source on Windows 7: tibble [SOLVED]
Hi Duncan, indeed, I did not see the other part of your message. I did BINPREF ?= C:/R-Project/Rtools/mingw_32/bin/ COMPILED_BY = g++ # instead of gcc-4.9.3 in "C:\R-Project\R-3.3.0\etc\i386\Makeconf" and BINPREF ?= C:/R-Project/Rtools/mingw_64/bin/ COMPILED_BY = g++ # instead of gcc-4.9.3 in "C:\R-Project\R-3.3.0\etc\x64\Makeconf" Now I could compile the package with no futher errors. Messages are -- cut -- * installing *source* package 'tibble' ... ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft ** libs *** arch - i386 C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c matrixToDataFrame.cpp -o matrixToDataFrame.o C:/R-Project/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o tibble.dll tmp.def RcppExports.o matrixToDataFrame.o -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/i386 -lR installing to C:/R-Project/R-3.3.0/library/tibble/libs/i386 *** arch - x64 C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c matrixToDataFrame.cpp -o matrixToDataFrame.o C:/R-Project/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o tibble.dll tmp.def RcppExports.o matrixToDataFrame.o -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/x64 -lR installing to C:/R-Project/R-3.3.0/library/tibble/libs/x64 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded *** arch - i386 *** arch - x64 * DONE (tibble) -- cut -- So - complete success. Many thanks for your help. One last questions: Why did Rtools.exe not create a directory named "gcc-4.9.3" in "C:\R-Project\Rtools" and putting " C:\R-Project\Rtools\mingw_32" and "C:\R-Project\Rtools\mingw_64" directly in "C:\R-Project\Rtools\"? gcc-4.6.3 was installed that way. Kind regards Georg Von: Duncan Murdoch <murdoch.duncan at gmail.com> An: G.Maubach at weinwolf.de, Kopie: r-help at r-project.org Datum: 29.06.2016 16:21 Betreff: Re: Antwort: Re: [R] Installing from source on Windows 7: tibble On 29/06/2016 10:17 AM, G.Maubach at weinwolf.de wrote:> Hi Duncan, > > many thanks for your reply. > > I did insert die paths to the g++ compiler because I got the messageabout> the not existent compiler. > > I took the directories for the compiler out again: > > C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program > Files\Python 3.5\Scripts\;C:\Program Files\Python > 3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc. > > Calling > > install.packages("tibble", type = "source") > > > gives this message: > > -- cut -- > * installing *source* package 'tibble' ... > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > ** libs > > *** arch - i386 > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2-c> RcppExports.cpp -o RcppExports.o > c:/Rtools/mingw_32/bin/g++: not found > make: *** [RcppExports.o] Error 127 > Warnung: Ausf?hrung von Kommando 'make -f > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab > Status 2 > ERROR: compilation failed for package 'tibble' > * removing 'C:/R-Project/R-3.3.0/library/tibble' > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > Warning in install.packages : > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > "C:\R-Project\R-3.3.0\library" >C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz'> had status 1 > Warning in install.packages : > installation of package ?tibble? had non-zero exit status > -- cut -- > > What else could I do?You seem to have missed the second part of my advice, describing what to do with the two Makeconf files. Duncan Murdoch> > Kind regards > > Georg > > > > > > Von: Duncan Murdoch <murdoch.duncan at gmail.com> > An: G.Maubach at weinwolf.de, r-help at r-project.org, > Datum: 29.06.2016 13:07 > Betreff: Re: [R] Installing from source on Windows 7: tibble > > > > On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote: > > Hi All, > > > > I would like to install R packages from source on Windows 7 64-Bit. > > Currently my settings are: > > > > -- cut -- > >> sessionInfo() > > R version 3.3.0 (2016-05-03) > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > Running under: Windows 7 x64 (build 7601) Service Pack 1 > > > > locale: > > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > > [5] LC_TIME=German_Germany.1252 > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > loaded via a namespace (and not attached): > > [1] tools_3.3.0 > > -- cut -- > > > > The environment variable PATH on Windows 7 is set to: > > > > >C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program> > Files\Python 3.5\Scripts\;C:\Program Files\Python > > 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc. > > Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path. > They aren't needed; the first two could conceivably be harmful. > > > > > RTools is installed in C:\R-Project\RTools > > > > The call of > > > > C:\R-Project\Rtools\mingw_64\bin\g++.exe --version > > > > results in > > > > g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3 > > > > If I do > > > > > >> install.packages("tibble", type = "source") > > > > I get > > > > -- cut -- > > trying URL'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'> > Content type 'application/x-gzip' length 38038 bytes (37 KB) > > downloaded 37 KB > > > > * installing *source* package 'tibble' ... > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > > ** libs > > > > *** arch - i386 > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 > -c > > RcppExports.cpp -o RcppExports.o > > c:/Rtools/mingw_32/bin/g++: not found > > make: *** [RcppExports.o] Error 127 > > Warnung: Ausf?hrung von Kommando 'make -f > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab > > Status 2 > > ERROR: compilation failed for package 'tibble' > > * removing 'C:/R-Project/R-3.3.0/library/tibble' > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > > Warning in install.packages : > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > > "C:\R-Project\R-3.3.0\library" > > >C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'> > had status 1 > > Warning in install.packages : > > installation of package ?tibble? had non-zero exit status > > -- cut -- > > > > There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found " > > Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do Ineed> > to configure the settings in this file? > > Yes, since you haven't installed Rtools in the default location, you > should edit two Makeconf files. In > C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/ > > and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/ > > You need to make sure you don't have an environment variable named > BINPREF defined, or it will override these settings. (If you were > building just one architecture, you could do the setting by environment > variable, but not if you are trying to build both archs in one call.) > > Duncan Murdoch > > > > > I searched old aunt Google but did not understand what to do and howto> > configure R environment variables correctly. > > > > What do I need to do to install packages from source? > > > > Kind regards > > > > Georg > > > > > > ______________________________________________ > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > >
Duncan Murdoch
2016-Jun-29 15:34 UTC
[R] Antwort: Re: Antwort: Re: Installing from source on Windows 7: tibble [SOLVED]
On 29/06/2016 10:48 AM, G.Maubach at weinwolf.de wrote:> Hi Duncan, > > indeed, I did not see the other part of your message. > > I did > > BINPREF ?= C:/R-Project/Rtools/mingw_32/bin/ > COMPILED_BY = g++ # instead of gcc-4.9.3I wouldn't change the COMPILED_BY; some packages use it to configure themselves for gcc-4.9.3, as opposed to the previous version gcc-4.6.3.> > in "C:\R-Project\R-3.3.0\etc\i386\Makeconf" > > and > > BINPREF ?= C:/R-Project/Rtools/mingw_64/bin/ > COMPILED_BY = g++ # instead of gcc-4.9.3 > > in "C:\R-Project\R-3.3.0\etc\x64\Makeconf" > > Now I could compile the package with no futher errors. > > Messages are > > -- cut -- > * installing *source* package 'tibble' ... > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > ** libs > > *** arch - i386 > C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c > RcppExports.cpp -o RcppExports.o > C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c > matrixToDataFrame.cpp -o matrixToDataFrame.o > C:/R-Project/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o > tibble.dll tmp.def RcppExports.o matrixToDataFrame.o > -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 > -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/i386 -lR > installing to C:/R-Project/R-3.3.0/library/tibble/libs/i386 > > *** arch - x64 > C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c > RcppExports.cpp -o RcppExports.o > C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c > matrixToDataFrame.cpp -o matrixToDataFrame.o > C:/R-Project/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o > tibble.dll tmp.def RcppExports.o matrixToDataFrame.o > -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 > -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/x64 -lR > installing to C:/R-Project/R-3.3.0/library/tibble/libs/x64 > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices > ** installing vignettes > ** testing if installed package can be loaded > *** arch - i386 > *** arch - x64 > * DONE (tibble) > -- cut -- > > So - complete success. > > Many thanks for your help. > > One last questions: Why did Rtools.exe not create a directory named > "gcc-4.9.3" in "C:\R-Project\Rtools" and putting" > C:\R-Project\Rtools\mingw_32" and "C:\R-Project\Rtools\mingw_64" directly > in "C:\R-Project\Rtools\"? gcc-4.6.3 was installed that way.The 4.6.3 compiler was compiled for "multilib" operation: the same compiler took command line options to distinguish between 32 bit and 64 bit compiles. The newer version doesn't support that, so we need two separate installs. Duncan Murdoch> Kind regards > > Georg > > > > > > Von: Duncan Murdoch <murdoch.duncan at gmail.com> > An: G.Maubach at weinwolf.de, > Kopie: r-help at r-project.org > Datum: 29.06.2016 16:21 > Betreff: Re: Antwort: Re: [R] Installing from source on Windows 7: > tibble > > > > On 29/06/2016 10:17 AM, G.Maubach at weinwolf.de wrote: > > Hi Duncan, > > > > many thanks for your reply. > > > > I did insert die paths to the g++ compiler because I got the message > about > > the not existent compiler. > > > > I took the directories for the compiler out again: > > > > C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program > > Files\Python 3.5\Scripts\;C:\Program Files\Python > > 3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc. > > > > Calling > > > > install.packages("tibble", type = "source") > > > > > > gives this message: > > > > -- cut -- > > * installing *source* package 'tibble' ... > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > > ** libs > > > > *** arch - i386 > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 > -c > > RcppExports.cpp -o RcppExports.o > > c:/Rtools/mingw_32/bin/g++: not found > > make: *** [RcppExports.o] Error 127 > > Warnung: Ausf?hrung von Kommando 'make -f > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab > > Status 2 > > ERROR: compilation failed for package 'tibble' > > * removing 'C:/R-Project/R-3.3.0/library/tibble' > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > > Warning in install.packages : > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > > "C:\R-Project\R-3.3.0\library" > > > C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz' > > had status 1 > > Warning in install.packages : > > installation of package ?tibble? had non-zero exit status > > -- cut -- > > > > What else could I do? > > You seem to have missed the second part of my advice, describing what to > do with the two Makeconf files. > > Duncan Murdoch > > > > > Kind regards > > > > Georg > > > > > > > > > > > > Von: Duncan Murdoch <murdoch.duncan at gmail.com> > > An: G.Maubach at weinwolf.de, r-help at r-project.org, > > Datum: 29.06.2016 13:07 > > Betreff: Re: [R] Installing from source on Windows 7: tibble > > > > > > > > On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote: > > > Hi All, > > > > > > I would like to install R packages from source on Windows 7 64-Bit. > > > Currently my settings are: > > > > > > -- cut -- > > >> sessionInfo() > > > R version 3.3.0 (2016-05-03) > > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > Running under: Windows 7 x64 (build 7601) Service Pack 1 > > > > > > locale: > > > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > > > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > > > [5] LC_TIME=German_Germany.1252 > > > > > > attached base packages: > > > [1] stats graphics grDevices utils datasets methods base > > > > > > loaded via a namespace (and not attached): > > > [1] tools_3.3.0 > > > -- cut -- > > > > > > The environment variable PATH on Windows 7 is set to: > > > > > > > > > C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program > > > Files\Python 3.5\Scripts\;C:\Program Files\Python > > > 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc. > > > > Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path. > > They aren't needed; the first two could conceivably be harmful. > > > > > > > > RTools is installed in C:\R-Project\RTools > > > > > > The call of > > > > > > C:\R-Project\Rtools\mingw_64\bin\g++.exe --version > > > > > > results in > > > > > > g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3 > > > > > > If I do > > > > > > > > >> install.packages("tibble", type = "source") > > > > > > I get > > > > > > -- cut -- > > > trying URL > 'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz' > > > Content type 'application/x-gzip' length 38038 bytes (37 KB) > > > downloaded 37 KB > > > > > > * installing *source* package 'tibble' ... > > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > > > ** libs > > > > > > *** arch - i386 > > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG > > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 > > -c > > > RcppExports.cpp -o RcppExports.o > > > c:/Rtools/mingw_32/bin/g++: not found > > > make: *** [RcppExports.o] Error 127 > > > Warnung: Ausf?hrung von Kommando 'make -f > > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab > > > Status 2 > > > ERROR: compilation failed for package 'tibble' > > > * removing 'C:/R-Project/R-3.3.0/library/tibble' > > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > > > Warning in install.packages : > > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > > > "C:\R-Project\R-3.3.0\library" > > > > > > C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz' > > > had status 1 > > > Warning in install.packages : > > > installation of package ?tibble? had non-zero exit status > > > -- cut -- > > > > > > There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found " > > > Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do I > need > > > to configure the settings in this file? > > > > Yes, since you haven't installed Rtools in the default location, you > > should edit two Makeconf files. In > > C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want > > > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/ > > > > and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want > > > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/ > > > > You need to make sure you don't have an environment variable named > > BINPREF defined, or it will override these settings. (If you were > > building just one architecture, you could do the setting by environment > > variable, but not if you are trying to build both archs in one call.) > > > > Duncan Murdoch > > > > > > > > I searched old aunt Google but did not understand what to do and how > to > > > configure R environment variables correctly. > > > > > > What do I need to do to install packages from source? > > > > > > Kind regards > > > > > > Georg > > > > > > > > > ______________________________________________ > > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > > > https://stat.ethz.ch/mailman/listinfo/r-help > > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > > and provide commented, minimal, self-contained, reproducible code. > > > > > > > > > > > >
G.Maubach at weinwolf.de
2016-Jun-30 06:35 UTC
[R] Antwort: Re: Antwort: Re: Antwort: Re: Installing from source on Windows 7: tibble [RE OPENED]
Hi Duncan, I would not have changed the COMPILED_BY option unless I thought I have to. In my "C:\R-Project\Rtools\mingw_32\bin" I have c++.exe g++.exe gcc.exe i686-w64-mingw32-c++.exe i686-w64-mingw32-g++.exe i686-w64-mingw32-gcc-4.9.3.exe i686-w64-mingw32-gcc.exe In my "C:\R-Project\Rtools\mingw_64\bin" I have c++.exe cpp.exe g++.exe gcc.exe x86_64-w64-mingw32-c++.exe x86_64-w64-mingw32-g++.exe x86_64-w64-mingw32-gcc-4.9.3.exe x86_64-w64-mingw32-gcc.exe Which one should I configure and use? Kind regards Georg Von: Duncan Murdoch <murdoch.duncan at gmail.com> An: G.Maubach at weinwolf.de, Kopie: r-help at r-project.org Datum: 29.06.2016 17:34 Betreff: Re: Antwort: Re: Antwort: Re: [R] Installing from source on Windows 7: tibble [SOLVED] On 29/06/2016 10:48 AM, G.Maubach at weinwolf.de wrote:> Hi Duncan, > > indeed, I did not see the other part of your message. > > I did > > BINPREF ?= C:/R-Project/Rtools/mingw_32/bin/ > COMPILED_BY = g++ # instead of gcc-4.9.3I wouldn't change the COMPILED_BY; some packages use it to configure themselves for gcc-4.9.3, as opposed to the previous version gcc-4.6.3.> > in "C:\R-Project\R-3.3.0\etc\i386\Makeconf" > > and > > BINPREF ?= C:/R-Project/Rtools/mingw_64/bin/ > COMPILED_BY = g++ # instead of gcc-4.9.3 > > in "C:\R-Project\R-3.3.0\etc\x64\Makeconf" > > Now I could compile the package with no futher errors. > > Messages are > > -- cut -- > * installing *source* package 'tibble' ... > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > ** libs > > *** arch - i386 > C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2-c> RcppExports.cpp -o RcppExports.o > C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2-c> matrixToDataFrame.cpp -o matrixToDataFrame.o > C:/R-Project/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o > tibble.dll tmp.def RcppExports.o matrixToDataFrame.o > -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 > -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/i386 -lR > installing to C:/R-Project/R-3.3.0/library/tibble/libs/i386 > > *** arch - x64 > C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2-c> RcppExports.cpp -o RcppExports.o > C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" > -DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2-c> matrixToDataFrame.cpp -o matrixToDataFrame.o > C:/R-Project/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o > tibble.dll tmp.def RcppExports.o matrixToDataFrame.o > -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 > -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/x64 -lR > installing to C:/R-Project/R-3.3.0/library/tibble/libs/x64 > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices > ** installing vignettes > ** testing if installed package can be loaded > *** arch - i386 > *** arch - x64 > * DONE (tibble) > -- cut -- > > So - complete success. > > Many thanks for your help. > > One last questions: Why did Rtools.exe not create a directory named > "gcc-4.9.3" in "C:\R-Project\Rtools" and putting" > C:\R-Project\Rtools\mingw_32" and "C:\R-Project\Rtools\mingw_64"directly> in "C:\R-Project\Rtools\"? gcc-4.6.3 was installed that way.The 4.6.3 compiler was compiled for "multilib" operation: the same compiler took command line options to distinguish between 32 bit and 64 bit compiles. The newer version doesn't support that, so we need two separate installs. Duncan Murdoch> Kind regards > > Georg > > > > > > Von: Duncan Murdoch <murdoch.duncan at gmail.com> > An: G.Maubach at weinwolf.de, > Kopie: r-help at r-project.org > Datum: 29.06.2016 16:21 > Betreff: Re: Antwort: Re: [R] Installing from source on Windows7:> tibble > > > > On 29/06/2016 10:17 AM, G.Maubach at weinwolf.de wrote: > > Hi Duncan, > > > > many thanks for your reply. > > > > I did insert die paths to the g++ compiler because I got the message > about > > the not existent compiler. > > > > I took the directories for the compiler out again: > > > > C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program > > Files\Python 3.5\Scripts\;C:\Program Files\Python > > 3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc. > > > > Calling > > > > install.packages("tibble", type = "source") > > > > > > gives this message: > > > > -- cut -- > > * installing *source* package 'tibble' ... > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > > ** libs > > > > *** arch - i386 > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 > -c > > RcppExports.cpp -o RcppExports.o > > c:/Rtools/mingw_32/bin/g++: not found > > make: *** [RcppExports.o] Error 127 > > Warnung: Ausf?hrung von Kommando 'make -f > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab > > Status 2 > > ERROR: compilation failed for package 'tibble' > > * removing 'C:/R-Project/R-3.3.0/library/tibble' > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > > Warning in install.packages : > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > > "C:\R-Project\R-3.3.0\library" > > >C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz'> > had status 1 > > Warning in install.packages : > > installation of package ?tibble? had non-zero exit status > > -- cut -- > > > > What else could I do? > > You seem to have missed the second part of my advice, describing what to > do with the two Makeconf files. > > Duncan Murdoch > > > > > Kind regards > > > > Georg > > > > > > > > > > > > Von: Duncan Murdoch <murdoch.duncan at gmail.com> > > An: G.Maubach at weinwolf.de, r-help at r-project.org, > > Datum: 29.06.2016 13:07 > > Betreff: Re: [R] Installing from source on Windows 7: tibble > > > > > > > > On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote: > > > Hi All, > > > > > > I would like to install R packages from source on Windows 7 64-Bit. > > > Currently my settings are: > > > > > > -- cut -- > > >> sessionInfo() > > > R version 3.3.0 (2016-05-03) > > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > Running under: Windows 7 x64 (build 7601) Service Pack 1 > > > > > > locale: > > > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > > > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > > > [5] LC_TIME=German_Germany.1252 > > > > > > attached base packages: > > > [1] stats graphics grDevices utils datasets methods base > > > > > > loaded via a namespace (and not attached): > > > [1] tools_3.3.0 > > > -- cut -- > > > > > > The environment variable PATH on Windows 7 is set to: > > > > > > > > >C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program> > > Files\Python 3.5\Scripts\;C:\Program Files\Python > > > 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc. > > > > Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path. > > They aren't needed; the first two could conceivably be harmful. > > > > > > > > RTools is installed in C:\R-Project\RTools > > > > > > The call of > > > > > > C:\R-Project\Rtools\mingw_64\bin\g++.exe --version > > > > > > results in > > > > > > g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3 > > > > > > If I do > > > > > > > > >> install.packages("tibble", type = "source") > > > > > > I get > > > > > > -- cut -- > > > trying URL > 'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz' > > > Content type 'application/x-gzip' length 38038 bytes (37 KB) > > > downloaded 37 KB > > > > > > * installing *source* package 'tibble' ... > > > ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft > > > ** libs > > > > > > *** arch - i386 > > > c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"-DNDEBUG> > > -I"C:/R-Project/R-3.3.0/library/Rcpp/include" > > > -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall-mtune=core2> > -c > > > RcppExports.cpp -o RcppExports.o > > > c:/Rtools/mingw_32/bin/g++: not found > > > make: *** [RcppExports.o] Error 127 > > > Warnung: Ausf?hrung von Kommando 'make -f > > > "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f > > > "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" > > > SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' > > > SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"'ergab> > > Status 2 > > > ERROR: compilation failed for package 'tibble' > > > * removing 'C:/R-Project/R-3.3.0/library/tibble' > > > * restoring previous 'C:/R-Project/R-3.3.0/library/tibble' > > > Warning in install.packages : > > > running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l > > > "C:\R-Project\R-3.3.0\library" > > > > > >C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'> > > had status 1 > > > Warning in install.packages : > > > installation of package ?tibble? had non-zero exit status > > > -- cut -- > > > > > > There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found"> > > Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do I > need > > > to configure the settings in this file? > > > > Yes, since you haven't installed Rtools in the default location, you > > should edit two Makeconf files. In > > C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want > > > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/ > > > > and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want > > > > BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/ > > > > You need to make sure you don't have an environment variable named > > BINPREF defined, or it will override these settings. (If you were > > building just one architecture, you could do the setting byenvironment> > variable, but not if you are trying to build both archs in one call.) > > > > Duncan Murdoch > > > > > > > > I searched old aunt Google but did not understand what to do and how > to > > > configure R environment variables correctly. > > > > > > What do I need to do to install packages from source? > > > > > > Kind regards > > > > > > Georg > > > > > > > > > ______________________________________________ > > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > > > https://stat.ethz.ch/mailman/listinfo/r-help > > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > > and provide commented, minimal, self-contained, reproducible code. > > > > > > > > > > > >