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G.Maubach at weinwolf.de

2016-Jun-29 09:49 UTC

[R] Installing from source on Windows 7: tibble

Hi All,

I would like to install R packages from source on Windows 7 64-Bit. 
Currently my settings are:

-- cut --> sessionInfo()R version 3.3.0 (2016-05-03)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252 
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C 
[5] LC_TIME=German_Germany.1252 

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base 

loaded via a namespace (and not attached):
[1] tools_3.3.0
-- cut --

The environment variable PATH on Windows 7 is set to:

C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program
Files\Python 3.5\Scripts\;C:\Program Files\Python 
3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc.

RTools is installed in C:\R-Project\RTools

The call of

C:\R-Project\Rtools\mingw_64\bin\g++.exe --version

results in

g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3

If I do

> install.packages("tibble", type = "source")
I get

-- cut --
trying URL 'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'
Content type 'application/x-gzip' length 38038 bytes (37 KB)
downloaded 37 KB

* installing *source* package 'tibble' ...
** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG 
-I"C:/R-Project/R-3.3.0/library/Rcpp/include" 
-I"d:/Compiler/gcc-4.9.3/local330/include"     -O2 -Wall  -mtune=core2
-c
RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_32/bin/g++: not found
make: *** [RcppExports.o] Error 127
Warnung: Ausf?hrung von Kommando 'make -f 
"C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f 
"C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" 
SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' 
SHLIB="tibble.dll" OBJECTS="RcppExports.o
matrixToDataFrame.o"' ergab
Status 2
ERROR: compilation failed for package 'tibble'
* removing 'C:/R-Project/R-3.3.0/library/tibble'
* restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
Warning in install.packages :
  running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
"C:\R-Project\R-3.3.0\library" 
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'
had status 1
Warning in install.packages :
  installation of package ?tibble? had non-zero exit status
-- cut --

There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found
"
Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do
I need
to configure the settings in this file?

I searched old aunt Google but did not understand what to do and how to 
configure R environment variables correctly.

What do I need to do to install packages from source?

Kind regards

Georg

Duncan Murdoch

2016-Jun-29 11:08 UTC

head link

[R] Installing from source on Windows 7: tibble

On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote:> Hi All,
>
> I would like to install R packages from source on Windows 7 64-Bit.
> Currently my settings are:
>
> -- cut --
>> sessionInfo()
> R version 3.3.0 (2016-05-03)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 7 x64 (build 7601) Service Pack 1
>
> locale:
> [1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252
> [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
> [5] LC_TIME=German_Germany.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_3.3.0
> -- cut --
>
> The environment variable PATH on Windows 7 is set to:
>
>
C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program
> Files\Python 3.5\Scripts\;C:\Program Files\Python
> 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc.
Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path. 
They aren't needed; the first two could conceivably be harmful.
>
> RTools is installed in C:\R-Project\RTools
>
> The call of
>
> C:\R-Project\Rtools\mingw_64\bin\g++.exe --version
>
> results in
>
> g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3
>
> If I do
>
>
>> install.packages("tibble", type = "source")
>
> I get
>
> -- cut --
> trying URL
'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'
> Content type 'application/x-gzip' length 38038 bytes (37 KB)
> downloaded 37 KB
>
> * installing *source* package 'tibble' ...
> ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft
> ** libs
>
> *** arch - i386
> c:/Rtools/mingw_32/bin/g++  -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG
> -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include"     -O2 -Wall 
-mtune=core2 -c
> RcppExports.cpp -o RcppExports.o
> c:/Rtools/mingw_32/bin/g++: not found
> make: *** [RcppExports.o] Error 127
> Warnung: Ausf?hrung von Kommando 'make -f
> "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
> "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
> SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)'
SHLIB_LD='$(SHLIB_CXXLD)'
> SHLIB="tibble.dll" OBJECTS="RcppExports.o
matrixToDataFrame.o"' ergab
> Status 2
> ERROR: compilation failed for package 'tibble'
> * removing 'C:/R-Project/R-3.3.0/library/tibble'
> * restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
> Warning in install.packages :
>   running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD
INSTALL -l
> "C:\R-Project\R-3.3.0\library"
>
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'
> had status 1
> Warning in install.packages :
>   installation of package ?tibble? had non-zero exit status
> -- cut --
>
> There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I
found "
> Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it?
How do I need
> to configure the settings in this file?
Yes, since you haven't installed Rtools in the default location, you 
should edit two Makeconf files.  In 
C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want

BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/

and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want

BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/

You need to make sure you don't have an environment variable named 
BINPREF defined, or it will override these settings.  (If you were 
building just one architecture, you could do the setting by environment 
variable, but not if you are trying to build both archs in one call.)

Duncan Murdoch
>
> I searched old aunt Google but did not understand what to do and how to
> configure R environment variables correctly.
>
> What do I need to do to install packages from source?
>
> Kind regards
>
> Georg
>
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

G.Maubach at weinwolf.de

2016-Jun-29 14:17 UTC

head link

[R] Antwort: Re: Installing from source on Windows 7: tibble

Hi Duncan,

many thanks for your reply.

I did insert die paths to the g++ compiler because I got the message about 
the not existent compiler.

I took the directories for the compiler out again:

C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program 
Files\Python 3.5\Scripts\;C:\Program Files\Python 
3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc.

Calling

install.packages("tibble", type  = "source")


gives this message:

-- cut --
* installing *source* package 'tibble' ...
** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG 
-I"C:/R-Project/R-3.3.0/library/Rcpp/include" 
-I"d:/Compiler/gcc-4.9.3/local330/include"     -O2 -Wall  -mtune=core2
-c
RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_32/bin/g++: not found
make: *** [RcppExports.o] Error 127
Warnung: Ausf?hrung von Kommando 'make -f 
"C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f 
"C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk" 
SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' 
SHLIB="tibble.dll" OBJECTS="RcppExports.o
matrixToDataFrame.o"' ergab
Status 2
ERROR: compilation failed for package 'tibble'
* removing 'C:/R-Project/R-3.3.0/library/tibble'
* restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
Warning in install.packages :
  running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
"C:\R-Project\R-3.3.0\library" 
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz'
had status 1
Warning in install.packages :
  installation of package ?tibble? had non-zero exit status
-- cut --

What else could I do?

Kind regards

Georg





Von:    Duncan Murdoch <murdoch.duncan at gmail.com>
An:     G.Maubach at weinwolf.de, r-help at r-project.org, 
Datum:  29.06.2016 13:07
Betreff:        Re: [R] Installing from source on Windows 7: tibble



On 29/06/2016 5:49 AM, G.Maubach at weinwolf.de wrote:> Hi All,
>
> I would like to install R packages from source on Windows 7 64-Bit.
> Currently my settings are:
>
> -- cut --
>> sessionInfo()
> R version 3.3.0 (2016-05-03)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 7 x64 (build 7601) Service Pack 1
>
> locale:
> [1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252
> [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
> [5] LC_TIME=German_Germany.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_3.3.0
> -- cut --
>
> The environment variable PATH on Windows 7 is set to:
>
> 
C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program> Files\Python 3.5\Scripts\;C:\Program Files\Python
> 3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc.
Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path. 
They aren't needed; the first two could conceivably be harmful.
>
> RTools is installed in C:\R-Project\RTools
>
> The call of
>
> C:\R-Project\Rtools\mingw_64\bin\g++.exe --version
>
> results in
>
> g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3
>
> If I do
>
>
>> install.packages("tibble", type = "source")
>
> I get
>
> -- cut --
> trying URL
'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'
> Content type 'application/x-gzip' length 38038 bytes (37 KB)
> downloaded 37 KB
>
> * installing *source* package 'tibble' ...
> ** Paket 'tibble' erfolgreich entpackt und MD5 Summen ?berpr?ft
> ** libs
>
> *** arch - i386
> c:/Rtools/mingw_32/bin/g++  -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG
> -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
> -I"d:/Compiler/gcc-4.9.3/local330/include"     -O2 -Wall 
-mtune=core2
-c> RcppExports.cpp -o RcppExports.o
> c:/Rtools/mingw_32/bin/g++: not found
> make: *** [RcppExports.o] Error 127
> Warnung: Ausf?hrung von Kommando 'make -f
> "C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
> "C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
> SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)'
SHLIB_LD='$(SHLIB_CXXLD)'
> SHLIB="tibble.dll" OBJECTS="RcppExports.o
matrixToDataFrame.o"' ergab
> Status 2
> ERROR: compilation failed for package 'tibble'
> * removing 'C:/R-Project/R-3.3.0/library/tibble'
> * restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
> Warning in install.packages :
>   running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD
INSTALL -l
> "C:\R-Project\R-3.3.0\library"
> 
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'> had status 1
> Warning in install.packages :
>   installation of package ?tibble? had non-zero exit status
> -- cut --
>
> There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I
found "
> Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it?
How do I need
> to configure the settings in this file?
Yes, since you haven't installed Rtools in the default location, you 
should edit two Makeconf files.  In 
C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want

BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/

and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want

BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/

You need to make sure you don't have an environment variable named 
BINPREF defined, or it will override these settings.  (If you were 
building just one architecture, you could do the setting by environment 
variable, but not if you are trying to build both archs in one call.)

Duncan Murdoch
>
> I searched old aunt Google but did not understand what to do and how to
> configure R environment variables correctly.
>
> What do I need to do to install packages from source?
>
> Kind regards
>
> Georg
>
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide 
http://www.R-project.org/posting-guide.html> and provide commented, minimal, self-contained, reproducible code.
>

R help - Jun 2016 - Installing from source on Windows 7: tibble

[R] Installing from source on Windows 7: tibble

[R] Installing from source on Windows 7: tibble

[R] Antwort: Re: Installing from source on Windows 7: tibble