I am trying to install Rcpp to a local library on an HPC. I am having
problems. I can provide any relevant information. Thank you in advance for
the help.
install.packages("Rcpp", repos=*)
*=a couple of different repos; all give the same errors
Relevant Cutout of errors (note I have replaced my home directory with
"HOME"):
Warning in file.copy(file.path(R.home("doc"), "html",
"R.css"), outman) :
problem copying /tools/R-3.2.4/lib64/R/doc/html/R.css to
/HOME/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/html/R.css: No such file or
directory
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/HOME/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/libs/Rcpp.so':
/HOME/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/libs/Rcpp.so: undefined
symbol: _ZSt24__throw_out_of_range_fmtPKcz
Error: loading failed
Execution halted
ERROR: loading failed
Session Info:
R version 3.2.4 (2016-03-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.6 (Final)
locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.2.4
kindest regards,
--
Stephen Sefick, PhD
**************************************************
Auburn University
Biological Sciences
**************************************************
sas0025 at auburn.edu
http://www.auburn.edu/~sas0025
**************************************************
Let's not spend our time and resources thinking about things that are so
little or so large that all they really do for us is puff us up and make us
feel like gods. We are mammals, and have not exhausted the annoying little
problems of being mammals.
-K. Mullis
"A big computer, a complex algorithm and a long time does not equal
science."
-Robert Gentleman
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