This is the output.
I want to plot, for example FRic
$nbsp
com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12
com13 com14 com15 com16
17 21 18 12 15 20 16 12 18 15 18 16
10 11 17 20
com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
com29 com30 com31 com32
9 13 11 10 11 15 12 16 18 18 11 19
12 13 13 12
com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
com45 com46 com47 com48
15 11 15 8 7 12 10 9 12 15 13 13
15 13 10 16
com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
com61 com62 com63 com64
14 12 14 13 14 13 15 13 11 12 16 13
9 8 11 15
com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
com77 com78 com79 com80
13 18 13 15 10 11 12 11 14 8 10 12
11 12 14 13
com81 com82
9 12
$sing.sp
com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12
com13 com14 com15 com16
17 21 18 12 15 20 16 12 18 15 18 16
10 11 17 20
com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28
com29 com30 com31 com32
9 13 11 10 11 15 12 16 18 18 11 19
12 13 13 12
com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44
com45 com46 com47 com48
14 11 15 8 7 12 10 9 12 15 13 13
15 13 10 16
com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60
com61 com62 com63 com64
14 12 13 13 14 13 15 13 11 12 16 13
9 8 11 15
com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76
com77 com78 com79 com80
13 17 13 15 10 11 12 11 14 8 10 12
11 12 14 13
com81 com82
9 12
$FRic
com1 com2 com3 com4 com5
com6 com7
3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04
1.012949e-03 2.934536e-04
com8 com9 com10 com11 com12
com13 com14
1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04
1.480860e-05 1.060512e-04
com15 com16 com17 com18 com19
com20 com21
4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06
1.452446e-05 1.855957e-05
com22 com23 com24 com25 com26
com27 com28
2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04
3.111325e-05 6.290088e-04
com29 com30 com31 com32 com33
com34 com35
3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04
1.234508e-04 2.784301e-04
com36 com37 com38 com39 com40
com41 com42
1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06
1.210002e-04 1.666034e-04
com43 com44 com45 com46 com47
com48 com49
1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05
1.357136e-04 1.821851e-04
com50 com51 com52 com53 com54
com55 com56
4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04
1.787888e-04 1.759204e-05
com57 com58 com59 com60 com61
com62 com63
9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06
9.606009e-08 1.019480e-04
com64 com65 com66 com67 com68
com69 com70
2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04
5.675463e-06 9.878848e-05
com71 com72 com73 com74 com75
com76 com77
6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05
1.183863e-04 7.457464e-05
com78 com79 com80 com81 com82
6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05
$qual.FRic
[1] 0.7035642
$FEve
com1 com2 com3 com4 com5 com6 com7
com8 com9
0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967
0.5857688 0.4271764
com10 com11 com12 com13 com14 com15 com16
com17 com18
0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627
0.2707035 0.4530424
com19 com20 com21 com22 com23 com24 com25
com26 com27
0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650
0.4955940 0.5116752
com28 com29 com30 com31 com32 com33 com34
com35 com36
0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726
0.2893205 0.5835605
com37 com38 com39 com40 com41 com42 com43
com44 com45
0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954
0.4962892 0.3749658
com46 com47 com48 com49 com50 com51 com52
com53 com54
0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491
0.3272834 0.4865427
com55 com56 com57 com58 com59 com60 com61
com62 com63
0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255
0.4652363 0.4111973
com64 com65 com66 com67 com68 com69 com70
com71 com72
0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836
0.3607790 0.5494437
com73 com74 com75 com76 com77 com78 com79
com80 com81
0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757
0.2249389 0.6562824
com82
0.6041267
$FDiv
com1 com2 com3 com4 com5 com6 com7
com8 com9
0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008
0.7379254 0.8131881
com10 com11 com12 com13 com14 com15 com16
com17 com18
0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732
0.8793599 0.7562019
com19 com20 com21 com22 com23 com24 com25
com26 com27
0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970
0.8269863 0.7891795
com28 com29 com30 com31 com32 com33 com34
com35 com36
0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626
0.8006321 0.8511148
com37 com38 com39 com40 com41 com42 com43
com44 com45
0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045
0.7259760 0.7992553
com46 com47 com48 com49 com50 com51 com52
com53 com54
0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368
0.7828276 0.8151245
com55 com56 com57 com58 com59 com60 com61
com62 com63
0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414
0.8338675 0.7070272
com64 com65 com66 com67 com68 com69 com70
com71 com72
0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884
0.9190267 0.8540992
com73 com74 com75 com76 com77 com78 com79
com80 com81
0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834
0.7303097 0.7693079
com82
0.7487281
$FDis
com1 com2 com3 com4 com5 com6
com7 com8
0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855
0.28989249 0.25752544
com9 com10 com11 com12 com13 com14
com15 com16
0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316
0.18128942 0.25731184
com17 com18 com19 com20 com21 com22
com23 com24
0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052
0.27212077 0.30880887
com25 com26 com27 com28 com29 com30
com31 com32
0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894
0.16182038 0.09958014
com33 com34 com35 com36 com37 com38
com39 com40
0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996
0.11766508 0.30940641
com41 com42 com43 com44 com45 com46
com47 com48
0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116
0.20589103 0.27339261
com49 com50 com51 com52 com53 com54
com55 com56
0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952
0.23674896 0.18732040
com57 com58 com59 com60 com61 com62
com63 com64
0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534
0.14840674 0.13731830
com65 com66 com67 com68 com69 com70
com71 com72
0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338
0.17920946 0.25265696
com73 com74 com75 com76 com77 com78
com79 com80
0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734
0.20430806 0.20674064
com81 com82
0.14270928 0.22673005
$RaoQ
com1 com2 com3 com4 com5 com6
com7 com8
0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404
0.10541586 0.08965742
com9 com10 com11 com12 com13 com14
com15 com16
0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519
0.06070379 0.08680368
com17 com18 com19 com20 com21 com22
com23 com24
0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960
0.09163325 0.11476244
com25 com26 com27 com28 com29 com30
com31 com32
0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682
0.04116800 0.02091466
com33 com34 com35 com36 com37 com38
com39 com40
0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861
0.03608639 0.11227991
com41 com42 com43 com44 com45 com46
com47 com48
0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611
0.05776898 0.08787335
com49 com50 com51 com52 com53 com54
com55 com56
0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030
0.07207671 0.05351944
com57 com58 com59 com60 com61 com62
com63 com64
0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321
0.03840657 0.03693797
com65 com66 com67 com68 com69 com70
com71 com72
0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483
0.05274964 0.07232899
com73 com74 com75 com76 com77 com78
com79 com80
0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721
0.05757830 0.05642231
com81 com82
0.03665132 0.06852237
$CWM
trait1 trait2 trait3 trait4
trait5
com1 Demersal Marine, brackish, freshwater 3.361717 Invertebrate Feeder
Browser
com2 Demersal Marine, brackish, freshwater 3.391770 Invertebrate Feeder
Browser
com3 Demersal Marine, brackish, freshwater 3.389626 Invertebrate Feeder
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com4 Demersal Marine, brackish, freshwater 3.437043 Invertebrate Feeder
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com5 Demersal Marine, brackish, freshwater 3.450760 Invertebrate Feeder
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com6 Demersal Marine, brackish, freshwater 3.354952 Invertebrate Feeder
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com7 Demersal Marine, brackish, freshwater 3.389917 Invertebrate Feeder
Browser
com8 Demersal Marine, brackish, freshwater 3.382973 Invertebrate Feeder
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com9 Demersal Marine, brackish, freshwater 3.371722 Invertebrate Feeder
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com10 Demersal Marine, brackish, freshwater 3.371057 Invertebrate Feeder
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com11 Demersal Marine, brackish, freshwater 3.389740 Invertebrate Feeder
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com12 Demersal Marine, brackish, freshwater 3.416626 Invertebrate Feeder
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com13 Demersal Marine, brackish, freshwater 3.348563 Invertebrate Feeder
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com14 Demersal Marine, brackish, freshwater 3.310051 Invertebrate Feeder
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com15 Demersal Marine, brackish, freshwater 3.274433 Invertebrate Feeder
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com16 Demersal Marine, brackish, freshwater 3.366033 Invertebrate Feeder
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com17 Pelagic Marine, brackish, freshwater 3.284144 Invertebrate Feeder
Browser/Hunter
com18 Demersal Marine, brackish, freshwater 3.352978 Invertebrate Feeder
Browser
com19 Demersal Marine, brackish, freshwater 3.313528 Invertebrate Feeder
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com20 Demersal Marine, brackish, freshwater 3.368486 Invertebrate Feeder
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com21 Demersal Marine, brackish, freshwater 3.346555 Invertebrate Feeder
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com22 Demersal Marine, brackish, freshwater 3.348779 Invertebrate Feeder
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com23 Demersal Marine, brackish, freshwater 3.316949 Invertebrate Feeder
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com24 Demersal Marine, brackish, freshwater 3.332521 Invertebrate Feeder
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com25 Demersal Marine, brackish, freshwater 3.398814 Invertebrate Feeder
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com26 Demersal Marine, brackish, freshwater 3.281393 Invertebrate Feeder
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com27 Demersal Marine, brackish, freshwater 3.325194 Invertebrate Feeder
Browser
com28 Demersal Marine, brackish, freshwater 3.356956 Invertebrate Feeder
Browser
com29 Demersal Marine, brackish, freshwater 3.282245 Invertebrate Feeder
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com30 Demersal Marine, brackish, freshwater 3.263298 Invertebrate Feeder
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com31 Demersal Marine, brackish, freshwater 3.304036 Invertebrate Feeder
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com32 Demersal Marine, brackish 3.230522 Invertebrate Feeder
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com33 Demersal Marine, brackish, freshwater 3.347002 Invertebrate Feeder
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com34 Demersal Marine, brackish, freshwater 3.430373 Invertebrate Feeder
Browser
com35 Demersal Marine, brackish, freshwater 3.318061 Invertebrate Feeder
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com36 Demersal Marine, brackish, freshwater 3.334512 Invertebrate Feeder
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com37 Demersal Marine, brackish, freshwater 3.354938 Invertebrate Feeder
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com38 Demersal Marine, brackish, freshwater 3.282320 Invertebrate Feeder
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com39 Demersal Marine, brackish, freshwater 3.307719 Invertebrate Feeder
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com40 Demersal Marine, brackish 3.343822 Invertebrate Feeder
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com41 Demersal Marine, brackish, freshwater 3.347152 Invertebrate Feeder
Browser
com42 Demersal Marine, brackish, freshwater 3.389799 Invertebrate Feeder
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com43 Demersal Marine, brackish, freshwater 3.400693 Invertebrate Feeder
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com44 Demersal Marine, brackish, freshwater 3.421323 Invertebrate Feeder
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com45 Demersal Marine, brackish, freshwater 3.329006 Invertebrate Feeder
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com46 Demersal Marine, brackish, freshwater 3.316793 Invertebrate Feeder
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com47 Benthic Marine, brackish, freshwater 3.309663 Invertebrate Feeder
Browser
com48 Demersal Marine, brackish, freshwater 3.372207 Invertebrate Feeder
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com49 Benthic Marine, brackish, freshwater 3.332736 Invertebrate Feeder
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com50 Benthic Marine, brackish, freshwater 3.311616 Invertebrate Feeder
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com51 Demersal Marine, brackish, freshwater 3.319775 Invertebrate Feeder
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com52 Demersal Marine, brackish, freshwater 3.277058 Invertebrate Feeder
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com53 Demersal Marine, brackish, freshwater 3.354429 Invertebrate Feeder
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com54 Demersal Marine, brackish, freshwater 3.339532 Invertebrate Feeder
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com55 Demersal Marine, brackish, freshwater 3.357153 Invertebrate Feeder
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com56 Benthic Marine, brackish, freshwater 3.279952 Invertebrate Feeder
Browser
com57 Benthic Marine, brackish 3.126602 Invertebrate Feeder
Browser
com58 Benthic Marine, brackish 3.217454 Invertebrate Feeder
Browser
com59 Demersal Marine, brackish 3.307770 Invertebrate Feeder
Browser
com60 Demersal Marine, brackish 3.252970 Invertebrate Feeder
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com61 Demersal Marine, brackish, freshwater 3.404601 Invertebrate Feeder
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com62 Pelagic Marine, brackish, freshwater 2.806229 Invertebrate Feeder
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com63 Demersal Marine, brackish, freshwater 3.287427 Invertebrate Feeder
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com64 Demersal Marine, brackish, freshwater 3.292238 Invertebrate Feeder
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com65 Demersal Marine, brackish 3.265497 Invertebrate Feeder
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com66 Demersal Marine, brackish, freshwater 3.317879 Invertebrate Feeder
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com67 Demersal Marine, brackish 3.258586 Invertebrate Feeder
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com68 Demersal Marine, brackish, freshwater 3.203772 Invertebrate Feeder
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com69 Demersal Marine, brackish, freshwater 3.289830 Invertebrate Feeder
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com70 Demersal Marine, brackish 3.326195 Invertebrate Feeder
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com71 Benthic Marine, brackish, freshwater 3.325590 Invertebrate Feeder
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com72 Benthic Marine, brackish, freshwater 3.297994 Invertebrate Feeder
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com73 Demersal Marine, brackish, freshwater 3.331968 Invertebrate Feeder
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com74 Demersal Marine, brackish, freshwater 3.395514 Invertebrate Feeder
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com75 Demersal Marine, brackish, freshwater 3.323936 Invertebrate Feeder
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com76 Demersal Marine, brackish, freshwater 3.201015 Invertebrate Feeder
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com77 Demersal Marine, brackish, freshwater 3.280311 Invertebrate Feeder
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com78 Demersal Marine, brackish, freshwater 3.318771 Invertebrate Feeder
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com79 Demersal Marine, brackish, freshwater 3.318253 Invertebrate Feeder
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com80 Demersal Marine, brackish, freshwater 3.374939 Invertebrate Feeder
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com81 Demersal Marine, brackish, freshwater 3.440927 Invertebrate Feeder
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com82 Demersal Marine, brackish, freshwater 3.381153 Invertebrate Feeder
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trait6
com1 0.5 - 1.0
com2 1.0 - 2.0
com3 1.0 - 2.0
com4 1.0 - 2.0
com5 1.0 - 2.0
com6 1.0 - 2.0
com7 1.0 - 2.0
com8 1.0 - 2.0
com9 0.5 - 1.0
com10 1.0 - 2.0
com11 1.0 - 2.0
com12 1.0 - 2.0
com13 0.5 - 1.0
com14 0.5 - 1.0
com15 0.5 - 1.0
com16 0.5 - 1.0
com17 1.0 - 2.0
com18 0.5 - 1.0
com19 0.5 - 1.0
com20 0.5 - 1.0
com21 0.5 - 1.0
com22 0.5 - 1.0
com23 1.0 - 2.0
com24 1.0 - 2.0
com25 1.0 - 2.0
com26 1.0 - 2.0
com27 1.0 - 2.0
com28 0.5 - 1.0
com29 0.5 - 1.0
com30 0.5 - 1.0
com31 0.5 - 1.0
com32 0.5 - 1.0
com33 0.5 - 1.0
com34 1.0 - 2.0
com35 0.5 - 1.0
com36 0.5 - 1.0
com37 1.0 - 2.0
com38 0.5 - 1.0
com39 0.5 - 1.0
com40 0.5 - 1.0
com41 0.5 - 1.0
com42 1.0 - 2.0
com43 1.0 - 2.0
com44 1.0 - 2.0
com45 < 0.5
com46 < 0.5
com47 < 0.5
com48 < 0.5
com49 < 0.5
com50 < 0.5
com51 < 0.5
com52 0.5 - 1.0
com53 0.5 - 1.0
com54 < 0.5
com55 < 0.5
com56 < 0.5
com57 < 0.5
com58 < 0.5
com59 0.5 - 1.0
com60 0.5 - 1.0
com61 1.0 - 2.0
com62 1.0 - 2.0
com63 0.5 - 1.0
com64 0.5 - 1.0
com65 0.5 - 1.0
com66 0.5 - 1.0
com67 0.5 - 1.0
com68 0.5 - 1.0
com69 0.5 - 1.0
com70 0.5 - 1.0
com71 < 0.5
com72 < 0.5
com73 < 0.5
com74 1.0 - 2.0
com75 0.5 - 1.0
com76 0.5 - 1.0
com77 1.0 - 2.0
com78 0.5 - 1.0
com79 0.5 - 1.0
com80 1.0 - 2.0
com81 1.0 - 2.0
com82 1.0 - 2.0
2016-02-22 13:58 GMT+00:00 stephen sefick <ssefick at gmail.com>:
> If memory serves me, dbFD returns a lot of output. What do you want to
> plot? Also, please provide reproducible examples, so that we can help you
> solve your R related queries.
> kindest regards,
>
> Stephen
>
> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro <
> fabio.monteiro1992 at gmail.com> wrote:
>
>> Hi
>>
>> thank you for your quick answer
>>
>> I finally managed to insert everything correctly and dbFD is
caltulated.
>>
>> I'm now trying to plot the results.
>>
>> My objects are matrices.
>>
>> x is a functional trait and species matrice. a is the species and
samples
>>
>> Thank you
>>
>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pikal at
precheza.cz>:
>>
>> > Hi
>> >
>> > comments inline
>> >
>> > > -----Original Message-----
>> > > From: R-help [mailto:r-help-bounces at r-project.org] On
Behalf Of Fabio
>> > > Monteiro
>> > > Sent: Monday, February 22, 2016 11:51 AM
>> > > To: r-help at r-project.org
>> > > Subject: [R] FD package
>> > >
>> > > Hi.
>> > >
>> > > First i would like to say that i'm really new in R. I
recently started
>> > > working with R and i'm using the FD package.
>> > >
>> > > I'm having some errors that doesn't make any sense.
>> > >
>> > > I have 2 matrix, one is the species with functional traits
and the
>> > > second one is the species and abundances.
>> >
>> > Your objects are matrices or data frames? From docs dbFD expects
various
>> > inputs byt they have to be properly formatted.
>> >
>> > >
>> > > When I try to run the dbFD to calculate the functional
diversity, the
>> > > error is the number of species is different in x and a.
>> > >
>> > > I checked a lot of times and the number of species is the
same and
>> > > there are no mistakes in their names like spaces or caps.
>> >
>> > How did you checked?
>> >
>> > dim(trait) and dim(abund)
>> >
>> > shall give you the same number of rows in traits as columns in
abund.
>> >
>> > If trait is vector, you need to use length instead of dim.
>> >
>> > >
>> > > Can you help me?
>> >
>> > Without better description of your objects and code you used you
hardly
>> > get any answer. You can start by using examples from help page,
which
>> shall
>> > work and see how your data differ from those examples.
>> >
>> > Cheers
>> > Petr
>> >
>> >
>> > >
>> > > F?bio Monteiro
>> > >
>> > > [[alternative HTML version deleted]]
>> > >
>> > > ______________________________________________
>> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and
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[[alternative HTML version deleted]]
Please see ?dput. What you provided is not a minimal, reproducible example (i.e., there is no R code). What kind of plot are you trying to plot? hist(data$FRic) will plot your data. I guess we need more information to be helpful. On Mon, Feb 22, 2016 at 8:03 AM, Fabio Monteiro < fabio.monteiro1992 at gmail.com> wrote:> This is the output. > > I want to plot, for example FRic > > $nbsp > com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 > com13 com14 com15 com16 > 17 21 18 12 15 20 16 12 18 15 18 16 > 10 11 17 20 > com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 > com29 com30 com31 com32 > 9 13 11 10 11 15 12 16 18 18 11 19 > 12 13 13 12 > com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 > com45 com46 com47 com48 > 15 11 15 8 7 12 10 9 12 15 13 13 > 15 13 10 16 > com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 > com61 com62 com63 com64 > 14 12 14 13 14 13 15 13 11 12 16 13 > 9 8 11 15 > com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 > com77 com78 com79 com80 > 13 18 13 15 10 11 12 11 14 8 10 12 > 11 12 14 13 > com81 com82 > 9 12 > > $sing.sp > com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 > com13 com14 com15 com16 > 17 21 18 12 15 20 16 12 18 15 18 16 > 10 11 17 20 > com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 > com29 com30 com31 com32 > 9 13 11 10 11 15 12 16 18 18 11 19 > 12 13 13 12 > com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 > com45 com46 com47 com48 > 14 11 15 8 7 12 10 9 12 15 13 13 > 15 13 10 16 > com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 > com61 com62 com63 com64 > 14 12 13 13 14 13 15 13 11 12 16 13 > 9 8 11 15 > com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 > com77 com78 com79 com80 > 13 17 13 15 10 11 12 11 14 8 10 12 > 11 12 14 13 > com81 com82 > 9 12 > > $FRic > com1 com2 com3 com4 com5 > com6 com7 > 3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04 > 1.012949e-03 2.934536e-04 > com8 com9 com10 com11 com12 > com13 com14 > 1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04 > 1.480860e-05 1.060512e-04 > com15 com16 com17 com18 com19 > com20 com21 > 4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06 > 1.452446e-05 1.855957e-05 > com22 com23 com24 com25 com26 > com27 com28 > 2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04 > 3.111325e-05 6.290088e-04 > com29 com30 com31 com32 com33 > com34 com35 > 3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04 > 1.234508e-04 2.784301e-04 > com36 com37 com38 com39 com40 > com41 com42 > 1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06 > 1.210002e-04 1.666034e-04 > com43 com44 com45 com46 com47 > com48 com49 > 1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05 > 1.357136e-04 1.821851e-04 > com50 com51 com52 com53 com54 > com55 com56 > 4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04 > 1.787888e-04 1.759204e-05 > com57 com58 com59 com60 com61 > com62 com63 > 9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06 > 9.606009e-08 1.019480e-04 > com64 com65 com66 com67 com68 > com69 com70 > 2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04 > 5.675463e-06 9.878848e-05 > com71 com72 com73 com74 com75 > com76 com77 > 6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05 > 1.183863e-04 7.457464e-05 > com78 com79 com80 com81 com82 > 6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05 > > $qual.FRic > [1] 0.7035642 > > $FEve > com1 com2 com3 com4 com5 com6 com7 > com8 com9 > 0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967 > 0.5857688 0.4271764 > com10 com11 com12 com13 com14 com15 com16 > com17 com18 > 0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627 > 0.2707035 0.4530424 > com19 com20 com21 com22 com23 com24 com25 > com26 com27 > 0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650 > 0.4955940 0.5116752 > com28 com29 com30 com31 com32 com33 com34 > com35 com36 > 0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726 > 0.2893205 0.5835605 > com37 com38 com39 com40 com41 com42 com43 > com44 com45 > 0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954 > 0.4962892 0.3749658 > com46 com47 com48 com49 com50 com51 com52 > com53 com54 > 0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491 > 0.3272834 0.4865427 > com55 com56 com57 com58 com59 com60 com61 > com62 com63 > 0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255 > 0.4652363 0.4111973 > com64 com65 com66 com67 com68 com69 com70 > com71 com72 > 0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836 > 0.3607790 0.5494437 > com73 com74 com75 com76 com77 com78 com79 > com80 com81 > 0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757 > 0.2249389 0.6562824 > com82 > 0.6041267 > > $FDiv > com1 com2 com3 com4 com5 com6 com7 > com8 com9 > 0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008 > 0.7379254 0.8131881 > com10 com11 com12 com13 com14 com15 com16 > com17 com18 > 0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732 > 0.8793599 0.7562019 > com19 com20 com21 com22 com23 com24 com25 > com26 com27 > 0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970 > 0.8269863 0.7891795 > com28 com29 com30 com31 com32 com33 com34 > com35 com36 > 0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626 > 0.8006321 0.8511148 > com37 com38 com39 com40 com41 com42 com43 > com44 com45 > 0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045 > 0.7259760 0.7992553 > com46 com47 com48 com49 com50 com51 com52 > com53 com54 > 0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368 > 0.7828276 0.8151245 > com55 com56 com57 com58 com59 com60 com61 > com62 com63 > 0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414 > 0.8338675 0.7070272 > com64 com65 com66 com67 com68 com69 com70 > com71 com72 > 0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884 > 0.9190267 0.8540992 > com73 com74 com75 com76 com77 com78 com79 > com80 com81 > 0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834 > 0.7303097 0.7693079 > com82 > 0.7487281 > > $FDis > com1 com2 com3 com4 com5 com6 > com7 com8 > 0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855 > 0.28989249 0.25752544 > com9 com10 com11 com12 com13 com14 > com15 com16 > 0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316 > 0.18128942 0.25731184 > com17 com18 com19 com20 com21 com22 > com23 com24 > 0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052 > 0.27212077 0.30880887 > com25 com26 com27 com28 com29 com30 > com31 com32 > 0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894 > 0.16182038 0.09958014 > com33 com34 com35 com36 com37 com38 > com39 com40 > 0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996 > 0.11766508 0.30940641 > com41 com42 com43 com44 com45 com46 > com47 com48 > 0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116 > 0.20589103 0.27339261 > com49 com50 com51 com52 com53 com54 > com55 com56 > 0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952 > 0.23674896 0.18732040 > com57 com58 com59 com60 com61 com62 > com63 com64 > 0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534 > 0.14840674 0.13731830 > com65 com66 com67 com68 com69 com70 > com71 com72 > 0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338 > 0.17920946 0.25265696 > com73 com74 com75 com76 com77 com78 > com79 com80 > 0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734 > 0.20430806 0.20674064 > com81 com82 > 0.14270928 0.22673005 > > $RaoQ > com1 com2 com3 com4 com5 com6 > com7 com8 > 0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404 > 0.10541586 0.08965742 > com9 com10 com11 com12 com13 com14 > com15 com16 > 0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519 > 0.06070379 0.08680368 > com17 com18 com19 com20 com21 com22 > com23 com24 > 0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960 > 0.09163325 0.11476244 > com25 com26 com27 com28 com29 com30 > com31 com32 > 0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682 > 0.04116800 0.02091466 > com33 com34 com35 com36 com37 com38 > com39 com40 > 0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861 > 0.03608639 0.11227991 > com41 com42 com43 com44 com45 com46 > com47 com48 > 0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611 > 0.05776898 0.08787335 > com49 com50 com51 com52 com53 com54 > com55 com56 > 0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030 > 0.07207671 0.05351944 > com57 com58 com59 com60 com61 com62 > com63 com64 > 0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321 > 0.03840657 0.03693797 > com65 com66 com67 com68 com69 com70 > com71 com72 > 0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483 > 0.05274964 0.07232899 > com73 com74 com75 com76 com77 com78 > com79 com80 > 0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721 > 0.05757830 0.05642231 > com81 com82 > 0.03665132 0.06852237 > > $CWM > trait1 trait2 trait3 trait4 > trait5 > com1 Demersal Marine, brackish, freshwater 3.361717 Invertebrate Feeder > Browser > com2 Demersal Marine, brackish, freshwater 3.391770 Invertebrate Feeder > Browser > com3 Demersal Marine, brackish, freshwater 3.389626 Invertebrate Feeder > Browser > com4 Demersal Marine, brackish, freshwater 3.437043 Invertebrate Feeder > Browser > com5 Demersal Marine, brackish, freshwater 3.450760 Invertebrate Feeder > Browser > com6 Demersal Marine, brackish, freshwater 3.354952 Invertebrate Feeder > Browser > com7 Demersal Marine, brackish, freshwater 3.389917 Invertebrate Feeder > Browser > com8 Demersal Marine, brackish, freshwater 3.382973 Invertebrate Feeder > Browser > com9 Demersal Marine, brackish, freshwater 3.371722 Invertebrate Feeder > Browser > com10 Demersal Marine, brackish, freshwater 3.371057 Invertebrate Feeder > Browser > com11 Demersal Marine, brackish, freshwater 3.389740 Invertebrate Feeder > Browser > com12 Demersal Marine, brackish, freshwater 3.416626 Invertebrate Feeder > Browser > com13 Demersal Marine, brackish, freshwater 3.348563 Invertebrate Feeder > Browser > com14 Demersal Marine, brackish, freshwater 3.310051 Invertebrate Feeder > Browser > com15 Demersal Marine, brackish, freshwater 3.274433 Invertebrate Feeder > Browser > com16 Demersal Marine, brackish, freshwater 3.366033 Invertebrate Feeder > Browser > com17 Pelagic Marine, brackish, freshwater 3.284144 Invertebrate Feeder > Browser/Hunter > com18 Demersal Marine, brackish, freshwater 3.352978 Invertebrate Feeder > Browser > com19 Demersal Marine, brackish, freshwater 3.313528 Invertebrate Feeder > Browser > com20 Demersal Marine, brackish, freshwater 3.368486 Invertebrate Feeder > Browser > com21 Demersal Marine, brackish, freshwater 3.346555 Invertebrate Feeder > Browser > com22 Demersal Marine, brackish, freshwater 3.348779 Invertebrate Feeder > Browser > com23 Demersal Marine, brackish, freshwater 3.316949 Invertebrate Feeder > Browser > com24 Demersal Marine, brackish, freshwater 3.332521 Invertebrate Feeder > Browser > com25 Demersal Marine, brackish, freshwater 3.398814 Invertebrate Feeder > Browser > com26 Demersal Marine, brackish, freshwater 3.281393 Invertebrate Feeder > Browser > com27 Demersal Marine, brackish, freshwater 3.325194 Invertebrate Feeder > Browser > com28 Demersal Marine, brackish, freshwater 3.356956 Invertebrate Feeder > Browser > com29 Demersal Marine, brackish, freshwater 3.282245 Invertebrate Feeder > Browser > com30 Demersal Marine, brackish, freshwater 3.263298 Invertebrate Feeder > Browser > com31 Demersal Marine, brackish, freshwater 3.304036 Invertebrate Feeder > Browser > com32 Demersal Marine, brackish 3.230522 Invertebrate Feeder > Browser > com33 Demersal Marine, brackish, freshwater 3.347002 Invertebrate Feeder > Browser > com34 Demersal Marine, brackish, freshwater 3.430373 Invertebrate Feeder > Browser > com35 Demersal Marine, brackish, freshwater 3.318061 Invertebrate Feeder > Browser > com36 Demersal Marine, brackish, freshwater 3.334512 Invertebrate Feeder > Browser > com37 Demersal Marine, brackish, freshwater 3.354938 Invertebrate Feeder > Browser > com38 Demersal Marine, brackish, freshwater 3.282320 Invertebrate Feeder > Browser > com39 Demersal Marine, brackish, freshwater 3.307719 Invertebrate Feeder > Browser > com40 Demersal Marine, brackish 3.343822 Invertebrate Feeder > Browser > com41 Demersal Marine, brackish, freshwater 3.347152 Invertebrate Feeder > Browser > com42 Demersal Marine, brackish, freshwater 3.389799 Invertebrate Feeder > Browser > com43 Demersal Marine, brackish, freshwater 3.400693 Invertebrate Feeder > Browser > com44 Demersal Marine, brackish, freshwater 3.421323 Invertebrate Feeder > Browser > com45 Demersal Marine, brackish, freshwater 3.329006 Invertebrate Feeder > Browser > com46 Demersal Marine, brackish, freshwater 3.316793 Invertebrate Feeder > Browser > com47 Benthic Marine, brackish, freshwater 3.309663 Invertebrate Feeder > Browser > com48 Demersal Marine, brackish, freshwater 3.372207 Invertebrate Feeder > Browser > com49 Benthic Marine, brackish, freshwater 3.332736 Invertebrate Feeder > Browser > com50 Benthic Marine, brackish, freshwater 3.311616 Invertebrate Feeder > Browser > com51 Demersal Marine, brackish, freshwater 3.319775 Invertebrate Feeder > Browser > com52 Demersal Marine, brackish, freshwater 3.277058 Invertebrate Feeder > Browser > com53 Demersal Marine, brackish, freshwater 3.354429 Invertebrate Feeder > Browser > com54 Demersal Marine, brackish, freshwater 3.339532 Invertebrate Feeder > Browser > com55 Demersal Marine, brackish, freshwater 3.357153 Invertebrate Feeder > Browser > com56 Benthic Marine, brackish, freshwater 3.279952 Invertebrate Feeder > Browser > com57 Benthic Marine, brackish 3.126602 Invertebrate Feeder > Browser > com58 Benthic Marine, brackish 3.217454 Invertebrate Feeder > Browser > com59 Demersal Marine, brackish 3.307770 Invertebrate Feeder > Browser > com60 Demersal Marine, brackish 3.252970 Invertebrate Feeder > Browser > com61 Demersal Marine, brackish, freshwater 3.404601 Invertebrate Feeder > Browser > com62 Pelagic Marine, brackish, freshwater 2.806229 Invertebrate Feeder > Browser > com63 Demersal Marine, brackish, freshwater 3.287427 Invertebrate Feeder > Browser > com64 Demersal Marine, brackish, freshwater 3.292238 Invertebrate Feeder > Browser > com65 Demersal Marine, brackish 3.265497 Invertebrate Feeder > Browser > com66 Demersal Marine, brackish, freshwater 3.317879 Invertebrate Feeder > Browser > com67 Demersal Marine, brackish 3.258586 Invertebrate Feeder > Browser > com68 Demersal Marine, brackish, freshwater 3.203772 Invertebrate Feeder > Browser > com69 Demersal Marine, brackish, freshwater 3.289830 Invertebrate Feeder > Browser > com70 Demersal Marine, brackish 3.326195 Invertebrate Feeder > Browser > com71 Benthic Marine, brackish, freshwater 3.325590 Invertebrate Feeder > Browser > com72 Benthic Marine, brackish, freshwater 3.297994 Invertebrate Feeder > Browser > com73 Demersal Marine, brackish, freshwater 3.331968 Invertebrate Feeder > Browser > com74 Demersal Marine, brackish, freshwater 3.395514 Invertebrate Feeder > Browser > com75 Demersal Marine, brackish, freshwater 3.323936 Invertebrate Feeder > Browser > com76 Demersal Marine, brackish, freshwater 3.201015 Invertebrate Feeder > Browser > com77 Demersal Marine, brackish, freshwater 3.280311 Invertebrate Feeder > Browser > com78 Demersal Marine, brackish, freshwater 3.318771 Invertebrate Feeder > Browser > com79 Demersal Marine, brackish, freshwater 3.318253 Invertebrate Feeder > Browser > com80 Demersal Marine, brackish, freshwater 3.374939 Invertebrate Feeder > Browser > com81 Demersal Marine, brackish, freshwater 3.440927 Invertebrate Feeder > Browser > com82 Demersal Marine, brackish, freshwater 3.381153 Invertebrate Feeder > Browser > trait6 > com1 0.5 - 1.0 > com2 1.0 - 2.0 > com3 1.0 - 2.0 > com4 1.0 - 2.0 > com5 1.0 - 2.0 > com6 1.0 - 2.0 > com7 1.0 - 2.0 > com8 1.0 - 2.0 > com9 0.5 - 1.0 > com10 1.0 - 2.0 > com11 1.0 - 2.0 > com12 1.0 - 2.0 > com13 0.5 - 1.0 > com14 0.5 - 1.0 > com15 0.5 - 1.0 > com16 0.5 - 1.0 > com17 1.0 - 2.0 > com18 0.5 - 1.0 > com19 0.5 - 1.0 > com20 0.5 - 1.0 > com21 0.5 - 1.0 > com22 0.5 - 1.0 > com23 1.0 - 2.0 > com24 1.0 - 2.0 > com25 1.0 - 2.0 > com26 1.0 - 2.0 > com27 1.0 - 2.0 > com28 0.5 - 1.0 > com29 0.5 - 1.0 > com30 0.5 - 1.0 > com31 0.5 - 1.0 > com32 0.5 - 1.0 > com33 0.5 - 1.0 > com34 1.0 - 2.0 > com35 0.5 - 1.0 > com36 0.5 - 1.0 > com37 1.0 - 2.0 > com38 0.5 - 1.0 > com39 0.5 - 1.0 > com40 0.5 - 1.0 > com41 0.5 - 1.0 > com42 1.0 - 2.0 > com43 1.0 - 2.0 > com44 1.0 - 2.0 > com45 < 0.5 > com46 < 0.5 > com47 < 0.5 > com48 < 0.5 > com49 < 0.5 > com50 < 0.5 > com51 < 0.5 > com52 0.5 - 1.0 > com53 0.5 - 1.0 > com54 < 0.5 > com55 < 0.5 > com56 < 0.5 > com57 < 0.5 > com58 < 0.5 > com59 0.5 - 1.0 > com60 0.5 - 1.0 > com61 1.0 - 2.0 > com62 1.0 - 2.0 > com63 0.5 - 1.0 > com64 0.5 - 1.0 > com65 0.5 - 1.0 > com66 0.5 - 1.0 > com67 0.5 - 1.0 > com68 0.5 - 1.0 > com69 0.5 - 1.0 > com70 0.5 - 1.0 > com71 < 0.5 > com72 < 0.5 > com73 < 0.5 > com74 1.0 - 2.0 > com75 0.5 - 1.0 > com76 0.5 - 1.0 > com77 1.0 - 2.0 > com78 0.5 - 1.0 > com79 0.5 - 1.0 > com80 1.0 - 2.0 > com81 1.0 - 2.0 > com82 1.0 - 2.0 > > 2016-02-22 13:58 GMT+00:00 stephen sefick <ssefick at gmail.com>: > >> If memory serves me, dbFD returns a lot of output. What do you want to >> plot? Also, please provide reproducible examples, so that we can help you >> solve your R related queries. >> kindest regards, >> >> Stephen >> >> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro < >> fabio.monteiro1992 at gmail.com> wrote: >> >>> Hi >>> >>> thank you for your quick answer >>> >>> I finally managed to insert everything correctly and dbFD is caltulated. >>> >>> I'm now trying to plot the results. >>> >>> My objects are matrices. >>> >>> x is a functional trait and species matrice. a is the species and samples >>> >>> Thank you >>> >>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pikal at precheza.cz>: >>> >>> > Hi >>> > >>> > comments inline >>> > >>> > > -----Original Message----- >>> > > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of >>> Fabio >>> > > Monteiro >>> > > Sent: Monday, February 22, 2016 11:51 AM >>> > > To: r-help at r-project.org >>> > > Subject: [R] FD package >>> > > >>> > > Hi. >>> > > >>> > > First i would like to say that i'm really new in R. I recently >>> started >>> > > working with R and i'm using the FD package. >>> > > >>> > > I'm having some errors that doesn't make any sense. >>> > > >>> > > I have 2 matrix, one is the species with functional traits and the >>> > > second one is the species and abundances. >>> > >>> > Your objects are matrices or data frames? From docs dbFD expects >>> various >>> > inputs byt they have to be properly formatted. >>> > >>> > > >>> > > When I try to run the dbFD to calculate the functional diversity, the >>> > > error is the number of species is different in x and a. >>> > > >>> > > I checked a lot of times and the number of species is the same and >>> > > there are no mistakes in their names like spaces or caps. >>> > >>> > How did you checked? >>> > >>> > dim(trait) and dim(abund) >>> > >>> > shall give you the same number of rows in traits as columns in abund. >>> > >>> > If trait is vector, you need to use length instead of dim. >>> > >>> > > >>> > > Can you help me? >>> > >>> > Without better description of your objects and code you used you hardly >>> > get any answer. You can start by using examples from help page, which >>> shall >>> > work and see how your data differ from those examples. >>> > >>> > Cheers >>> > Petr >>> > >>> > >>> > > >>> > > F?bio Monteiro >>> > > >>> > > [[alternative HTML version deleted]] >>> > > >>> > > ______________________________________________ >>> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> > > https://stat.ethz.ch/mailman/listinfo/r-help >>> > > PLEASE do read the posting guide http://www.R-project.org/posting- >>> > > guide.html >>> > > and provide commented, minimal, self-contained, reproducible code. >>> > >>> > ________________________________ >>> > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou >>> > ur?eny pouze jeho adres?t?m. >>> > Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? >>> > neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho >>> kopie >>> > vyma?te ze sv?ho syst?mu. >>> > Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento >>> email >>> > jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. >>> > Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou >>> modifikacemi >>> > ?i zpo?d?n?m p?enosu e-mailu. >>> > >>> > V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: >>> > - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? >>> > smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. >>> > - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? >>> p?ijmout; >>> > Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany >>> > p??jemce s dodatkem ?i odchylkou. >>> > - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve >>> > v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. >>> > - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za >>> > spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? >>> zmocn?n >>> > nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi >>> tohoto >>> > emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich >>> > existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. >>> > >>> > This e-mail and any documents attached to it may be confidential and >>> are >>> > intended only for its intended recipients. >>> > If you received this e-mail by mistake, please immediately inform its >>> > sender. Delete the contents of this e-mail with all attachments and its >>> > copies from your system. >>> > If you are not the intended recipient of this e-mail, you are not >>> > authorized to use, disseminate, copy or disclose this e-mail in any >>> manner. >>> > The sender of this e-mail shall not be liable for any possible damage >>> > caused by modifications of the e-mail or by delay with transfer of the >>> > email. >>> > >>> > In case that this e-mail forms part of business dealings: >>> > - the sender reserves the right to end negotiations about entering >>> into a >>> > contract in any time, for any reason, and without stating any >>> reasoning. >>> > - if the e-mail contains an offer, the recipient is entitled to >>> > immediately accept such offer; The sender of this e-mail (offer) >>> excludes >>> > any acceptance of the offer on the part of the recipient containing any >>> > amendment or variation. >>> > - the sender insists on that the respective contract is concluded only >>> > upon an express mutual agreement on all its aspects. >>> > - the sender of this e-mail informs that he/she is not authorized to >>> enter >>> > into any contracts on behalf of the company except for cases in which >>> > he/she is expressly authorized to do so in writing, and such >>> authorization >>> > or power of attorney is submitted to the recipient or the person >>> > represented by the recipient, or the existence of such authorization is >>> > known to the recipient of the person represented by the recipient. >>> > >>> >>> [[alternative HTML version deleted]] >>> >>> ______________________________________________ >>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide >>> http://www.R-project.org/posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. >> >> >> >> >> -- >> Stephen Sefick >> ************************************************** >> Auburn University >> Biological Sciences >> 331 Funchess Hall >> Auburn, Alabama >> 36849 >> ************************************************** >> sas0025 at auburn.edu >> http://www.auburn.edu/~sas0025 >> ************************************************** >> >> Let's not spend our time and resources thinking about things that are so >> little or so large that all they really do for us is puff us up and make us >> feel like gods. We are mammals, and have not exhausted the annoying little >> problems of being mammals. >> >> -K. Mullis >> >> "A big computer, a complex algorithm and a long time does not equal >> science." >> >> -Robert Gentleman >> >> >-- Stephen Sefick ************************************************** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama 36849 ************************************************** sas0025 at auburn.edu http://www.auburn.edu/~sas0025 ************************************************** Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals. -K. Mullis "A big computer, a complex algorithm and a long time does not equal science." -Robert Gentleman [[alternative HTML version deleted]]
> hist(data$FRic)Error in data$FRic : object of type 'closure' is not subsettable 2016-02-22 14:10 GMT+00:00 stephen sefick <ssefick at gmail.com>:> Please see ?dput. What you provided is not a minimal, reproducible example > (i.e., there is no R code). > > What kind of plot are you trying to plot? hist(data$FRic) will plot your > data. I guess we need more information to be helpful. > > > On Mon, Feb 22, 2016 at 8:03 AM, Fabio Monteiro < > fabio.monteiro1992 at gmail.com> wrote: > >> This is the output. >> >> I want to plot, for example FRic >> >> $nbsp >> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 >> com13 com14 com15 com16 >> 17 21 18 12 15 20 16 12 18 15 18 16 >> 10 11 17 20 >> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 >> com29 com30 com31 com32 >> 9 13 11 10 11 15 12 16 18 18 11 19 >> 12 13 13 12 >> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 >> com45 com46 com47 com48 >> 15 11 15 8 7 12 10 9 12 15 13 13 >> 15 13 10 16 >> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 >> com61 com62 com63 com64 >> 14 12 14 13 14 13 15 13 11 12 16 13 >> 9 8 11 15 >> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 >> com77 com78 com79 com80 >> 13 18 13 15 10 11 12 11 14 8 10 12 >> 11 12 14 13 >> com81 com82 >> 9 12 >> >> $sing.sp >> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 >> com13 com14 com15 com16 >> 17 21 18 12 15 20 16 12 18 15 18 16 >> 10 11 17 20 >> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 >> com29 com30 com31 com32 >> 9 13 11 10 11 15 12 16 18 18 11 19 >> 12 13 13 12 >> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 >> com45 com46 com47 com48 >> 14 11 15 8 7 12 10 9 12 15 13 13 >> 15 13 10 16 >> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 >> com61 com62 com63 com64 >> 14 12 13 13 14 13 15 13 11 12 16 13 >> 9 8 11 15 >> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 >> com77 com78 com79 com80 >> 13 17 13 15 10 11 12 11 14 8 10 12 >> 11 12 14 13 >> com81 com82 >> 9 12 >> >> $FRic >> com1 com2 com3 com4 com5 >> com6 com7 >> 3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04 >> 1.012949e-03 2.934536e-04 >> com8 com9 com10 com11 com12 >> com13 com14 >> 1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04 >> 1.480860e-05 1.060512e-04 >> com15 com16 com17 com18 com19 >> com20 com21 >> 4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06 >> 1.452446e-05 1.855957e-05 >> com22 com23 com24 com25 com26 >> com27 com28 >> 2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04 >> 3.111325e-05 6.290088e-04 >> com29 com30 com31 com32 com33 >> com34 com35 >> 3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04 >> 1.234508e-04 2.784301e-04 >> com36 com37 com38 com39 com40 >> com41 com42 >> 1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06 >> 1.210002e-04 1.666034e-04 >> com43 com44 com45 com46 com47 >> com48 com49 >> 1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05 >> 1.357136e-04 1.821851e-04 >> com50 com51 com52 com53 com54 >> com55 com56 >> 4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04 >> 1.787888e-04 1.759204e-05 >> com57 com58 com59 com60 com61 >> com62 com63 >> 9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06 >> 9.606009e-08 1.019480e-04 >> com64 com65 com66 com67 com68 >> com69 com70 >> 2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04 >> 5.675463e-06 9.878848e-05 >> com71 com72 com73 com74 com75 >> com76 com77 >> 6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05 >> 1.183863e-04 7.457464e-05 >> com78 com79 com80 com81 com82 >> 6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05 >> >> $qual.FRic >> [1] 0.7035642 >> >> $FEve >> com1 com2 com3 com4 com5 com6 com7 >> com8 com9 >> 0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967 >> 0.5857688 0.4271764 >> com10 com11 com12 com13 com14 com15 com16 >> com17 com18 >> 0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627 >> 0.2707035 0.4530424 >> com19 com20 com21 com22 com23 com24 com25 >> com26 com27 >> 0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650 >> 0.4955940 0.5116752 >> com28 com29 com30 com31 com32 com33 com34 >> com35 com36 >> 0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726 >> 0.2893205 0.5835605 >> com37 com38 com39 com40 com41 com42 com43 >> com44 com45 >> 0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954 >> 0.4962892 0.3749658 >> com46 com47 com48 com49 com50 com51 com52 >> com53 com54 >> 0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491 >> 0.3272834 0.4865427 >> com55 com56 com57 com58 com59 com60 com61 >> com62 com63 >> 0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255 >> 0.4652363 0.4111973 >> com64 com65 com66 com67 com68 com69 com70 >> com71 com72 >> 0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836 >> 0.3607790 0.5494437 >> com73 com74 com75 com76 com77 com78 com79 >> com80 com81 >> 0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757 >> 0.2249389 0.6562824 >> com82 >> 0.6041267 >> >> $FDiv >> com1 com2 com3 com4 com5 com6 com7 >> com8 com9 >> 0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008 >> 0.7379254 0.8131881 >> com10 com11 com12 com13 com14 com15 com16 >> com17 com18 >> 0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732 >> 0.8793599 0.7562019 >> com19 com20 com21 com22 com23 com24 com25 >> com26 com27 >> 0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970 >> 0.8269863 0.7891795 >> com28 com29 com30 com31 com32 com33 com34 >> com35 com36 >> 0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626 >> 0.8006321 0.8511148 >> com37 com38 com39 com40 com41 com42 com43 >> com44 com45 >> 0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045 >> 0.7259760 0.7992553 >> com46 com47 com48 com49 com50 com51 com52 >> com53 com54 >> 0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368 >> 0.7828276 0.8151245 >> com55 com56 com57 com58 com59 com60 com61 >> com62 com63 >> 0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414 >> 0.8338675 0.7070272 >> com64 com65 com66 com67 com68 com69 com70 >> com71 com72 >> 0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884 >> 0.9190267 0.8540992 >> com73 com74 com75 com76 com77 com78 com79 >> com80 com81 >> 0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834 >> 0.7303097 0.7693079 >> com82 >> 0.7487281 >> >> $FDis >> com1 com2 com3 com4 com5 com6 >> com7 com8 >> 0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855 >> 0.28989249 0.25752544 >> com9 com10 com11 com12 com13 com14 >> com15 com16 >> 0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316 >> 0.18128942 0.25731184 >> com17 com18 com19 com20 com21 com22 >> com23 com24 >> 0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052 >> 0.27212077 0.30880887 >> com25 com26 com27 com28 com29 com30 >> com31 com32 >> 0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894 >> 0.16182038 0.09958014 >> com33 com34 com35 com36 com37 com38 >> com39 com40 >> 0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996 >> 0.11766508 0.30940641 >> com41 com42 com43 com44 com45 com46 >> com47 com48 >> 0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116 >> 0.20589103 0.27339261 >> com49 com50 com51 com52 com53 com54 >> com55 com56 >> 0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952 >> 0.23674896 0.18732040 >> com57 com58 com59 com60 com61 com62 >> com63 com64 >> 0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534 >> 0.14840674 0.13731830 >> com65 com66 com67 com68 com69 com70 >> com71 com72 >> 0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338 >> 0.17920946 0.25265696 >> com73 com74 com75 com76 com77 com78 >> com79 com80 >> 0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734 >> 0.20430806 0.20674064 >> com81 com82 >> 0.14270928 0.22673005 >> >> $RaoQ >> com1 com2 com3 com4 com5 com6 >> com7 com8 >> 0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404 >> 0.10541586 0.08965742 >> com9 com10 com11 com12 com13 com14 >> com15 com16 >> 0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519 >> 0.06070379 0.08680368 >> com17 com18 com19 com20 com21 com22 >> com23 com24 >> 0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960 >> 0.09163325 0.11476244 >> com25 com26 com27 com28 com29 com30 >> com31 com32 >> 0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682 >> 0.04116800 0.02091466 >> com33 com34 com35 com36 com37 com38 >> com39 com40 >> 0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861 >> 0.03608639 0.11227991 >> com41 com42 com43 com44 com45 com46 >> com47 com48 >> 0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611 >> 0.05776898 0.08787335 >> com49 com50 com51 com52 com53 com54 >> com55 com56 >> 0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030 >> 0.07207671 0.05351944 >> com57 com58 com59 com60 com61 com62 >> com63 com64 >> 0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321 >> 0.03840657 0.03693797 >> com65 com66 com67 com68 com69 com70 >> com71 com72 >> 0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483 >> 0.05274964 0.07232899 >> com73 com74 com75 com76 com77 com78 >> com79 com80 >> 0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721 >> 0.05757830 0.05642231 >> com81 com82 >> 0.03665132 0.06852237 >> >> $CWM >> trait1 trait2 trait3 trait4 >> trait5 >> com1 Demersal Marine, brackish, freshwater 3.361717 Invertebrate Feeder >> Browser >> com2 Demersal Marine, brackish, freshwater 3.391770 Invertebrate Feeder >> Browser >> com3 Demersal Marine, brackish, freshwater 3.389626 Invertebrate Feeder >> Browser >> com4 Demersal Marine, brackish, freshwater 3.437043 Invertebrate Feeder >> Browser >> com5 Demersal Marine, brackish, freshwater 3.450760 Invertebrate Feeder >> Browser >> com6 Demersal Marine, brackish, freshwater 3.354952 Invertebrate Feeder >> Browser >> com7 Demersal Marine, brackish, freshwater 3.389917 Invertebrate Feeder >> Browser >> com8 Demersal Marine, brackish, freshwater 3.382973 Invertebrate Feeder >> Browser >> com9 Demersal Marine, brackish, freshwater 3.371722 Invertebrate Feeder >> Browser >> com10 Demersal Marine, brackish, freshwater 3.371057 Invertebrate Feeder >> Browser >> com11 Demersal Marine, brackish, freshwater 3.389740 Invertebrate Feeder >> Browser >> com12 Demersal Marine, brackish, freshwater 3.416626 Invertebrate Feeder >> Browser >> com13 Demersal Marine, brackish, freshwater 3.348563 Invertebrate Feeder >> Browser >> com14 Demersal Marine, brackish, freshwater 3.310051 Invertebrate Feeder >> Browser >> com15 Demersal Marine, brackish, freshwater 3.274433 Invertebrate Feeder >> Browser >> com16 Demersal Marine, brackish, freshwater 3.366033 Invertebrate Feeder >> Browser >> com17 Pelagic Marine, brackish, freshwater 3.284144 Invertebrate Feeder >> Browser/Hunter >> com18 Demersal Marine, brackish, freshwater 3.352978 Invertebrate Feeder >> Browser >> com19 Demersal Marine, brackish, freshwater 3.313528 Invertebrate Feeder >> Browser >> com20 Demersal Marine, brackish, freshwater 3.368486 Invertebrate Feeder >> Browser >> com21 Demersal Marine, brackish, freshwater 3.346555 Invertebrate Feeder >> Browser >> com22 Demersal Marine, brackish, freshwater 3.348779 Invertebrate Feeder >> Browser >> com23 Demersal Marine, brackish, freshwater 3.316949 Invertebrate Feeder >> Browser >> com24 Demersal Marine, brackish, freshwater 3.332521 Invertebrate Feeder >> Browser >> com25 Demersal Marine, brackish, freshwater 3.398814 Invertebrate Feeder >> Browser >> com26 Demersal Marine, brackish, freshwater 3.281393 Invertebrate Feeder >> Browser >> com27 Demersal Marine, brackish, freshwater 3.325194 Invertebrate Feeder >> Browser >> com28 Demersal Marine, brackish, freshwater 3.356956 Invertebrate Feeder >> Browser >> com29 Demersal Marine, brackish, freshwater 3.282245 Invertebrate Feeder >> Browser >> com30 Demersal Marine, brackish, freshwater 3.263298 Invertebrate Feeder >> Browser >> com31 Demersal Marine, brackish, freshwater 3.304036 Invertebrate Feeder >> Browser >> com32 Demersal Marine, brackish 3.230522 Invertebrate Feeder >> Browser >> com33 Demersal Marine, brackish, freshwater 3.347002 Invertebrate Feeder >> Browser >> com34 Demersal Marine, brackish, freshwater 3.430373 Invertebrate Feeder >> Browser >> com35 Demersal Marine, brackish, freshwater 3.318061 Invertebrate Feeder >> Browser >> com36 Demersal Marine, brackish, freshwater 3.334512 Invertebrate Feeder >> Browser >> com37 Demersal Marine, brackish, freshwater 3.354938 Invertebrate Feeder >> Browser >> com38 Demersal Marine, brackish, freshwater 3.282320 Invertebrate Feeder >> Browser >> com39 Demersal Marine, brackish, freshwater 3.307719 Invertebrate Feeder >> Browser >> com40 Demersal Marine, brackish 3.343822 Invertebrate Feeder >> Browser >> com41 Demersal Marine, brackish, freshwater 3.347152 Invertebrate Feeder >> Browser >> com42 Demersal Marine, brackish, freshwater 3.389799 Invertebrate Feeder >> Browser >> com43 Demersal Marine, brackish, freshwater 3.400693 Invertebrate Feeder >> Browser >> com44 Demersal Marine, brackish, freshwater 3.421323 Invertebrate Feeder >> Browser >> com45 Demersal Marine, brackish, freshwater 3.329006 Invertebrate Feeder >> Browser >> com46 Demersal Marine, brackish, freshwater 3.316793 Invertebrate Feeder >> Browser >> com47 Benthic Marine, brackish, freshwater 3.309663 Invertebrate Feeder >> Browser >> com48 Demersal Marine, brackish, freshwater 3.372207 Invertebrate Feeder >> Browser >> com49 Benthic Marine, brackish, freshwater 3.332736 Invertebrate Feeder >> Browser >> com50 Benthic Marine, brackish, freshwater 3.311616 Invertebrate Feeder >> Browser >> com51 Demersal Marine, brackish, freshwater 3.319775 Invertebrate Feeder >> Browser >> com52 Demersal Marine, brackish, freshwater 3.277058 Invertebrate Feeder >> Browser >> com53 Demersal Marine, brackish, freshwater 3.354429 Invertebrate Feeder >> Browser >> com54 Demersal Marine, brackish, freshwater 3.339532 Invertebrate Feeder >> Browser >> com55 Demersal Marine, brackish, freshwater 3.357153 Invertebrate Feeder >> Browser >> com56 Benthic Marine, brackish, freshwater 3.279952 Invertebrate Feeder >> Browser >> com57 Benthic Marine, brackish 3.126602 Invertebrate Feeder >> Browser >> com58 Benthic Marine, brackish 3.217454 Invertebrate Feeder >> Browser >> com59 Demersal Marine, brackish 3.307770 Invertebrate Feeder >> Browser >> com60 Demersal Marine, brackish 3.252970 Invertebrate Feeder >> Browser >> com61 Demersal Marine, brackish, freshwater 3.404601 Invertebrate Feeder >> Browser >> com62 Pelagic Marine, brackish, freshwater 2.806229 Invertebrate Feeder >> Browser >> com63 Demersal Marine, brackish, freshwater 3.287427 Invertebrate Feeder >> Browser >> com64 Demersal Marine, brackish, freshwater 3.292238 Invertebrate Feeder >> Browser >> com65 Demersal Marine, brackish 3.265497 Invertebrate Feeder >> Browser >> com66 Demersal Marine, brackish, freshwater 3.317879 Invertebrate Feeder >> Browser >> com67 Demersal Marine, brackish 3.258586 Invertebrate Feeder >> Browser >> com68 Demersal Marine, brackish, freshwater 3.203772 Invertebrate Feeder >> Browser >> com69 Demersal Marine, brackish, freshwater 3.289830 Invertebrate Feeder >> Browser >> com70 Demersal Marine, brackish 3.326195 Invertebrate Feeder >> Browser >> com71 Benthic Marine, brackish, freshwater 3.325590 Invertebrate Feeder >> Browser >> com72 Benthic Marine, brackish, freshwater 3.297994 Invertebrate Feeder >> Browser >> com73 Demersal Marine, brackish, freshwater 3.331968 Invertebrate Feeder >> Browser >> com74 Demersal Marine, brackish, freshwater 3.395514 Invertebrate Feeder >> Browser >> com75 Demersal Marine, brackish, freshwater 3.323936 Invertebrate Feeder >> Browser >> com76 Demersal Marine, brackish, freshwater 3.201015 Invertebrate Feeder >> Browser >> com77 Demersal Marine, brackish, freshwater 3.280311 Invertebrate Feeder >> Browser >> com78 Demersal Marine, brackish, freshwater 3.318771 Invertebrate Feeder >> Browser >> com79 Demersal Marine, brackish, freshwater 3.318253 Invertebrate Feeder >> Browser >> com80 Demersal Marine, brackish, freshwater 3.374939 Invertebrate Feeder >> Browser >> com81 Demersal Marine, brackish, freshwater 3.440927 Invertebrate Feeder >> Browser >> com82 Demersal Marine, brackish, freshwater 3.381153 Invertebrate Feeder >> Browser >> trait6 >> com1 0.5 - 1.0 >> com2 1.0 - 2.0 >> com3 1.0 - 2.0 >> com4 1.0 - 2.0 >> com5 1.0 - 2.0 >> com6 1.0 - 2.0 >> com7 1.0 - 2.0 >> com8 1.0 - 2.0 >> com9 0.5 - 1.0 >> com10 1.0 - 2.0 >> com11 1.0 - 2.0 >> com12 1.0 - 2.0 >> com13 0.5 - 1.0 >> com14 0.5 - 1.0 >> com15 0.5 - 1.0 >> com16 0.5 - 1.0 >> com17 1.0 - 2.0 >> com18 0.5 - 1.0 >> com19 0.5 - 1.0 >> com20 0.5 - 1.0 >> com21 0.5 - 1.0 >> com22 0.5 - 1.0 >> com23 1.0 - 2.0 >> com24 1.0 - 2.0 >> com25 1.0 - 2.0 >> com26 1.0 - 2.0 >> com27 1.0 - 2.0 >> com28 0.5 - 1.0 >> com29 0.5 - 1.0 >> com30 0.5 - 1.0 >> com31 0.5 - 1.0 >> com32 0.5 - 1.0 >> com33 0.5 - 1.0 >> com34 1.0 - 2.0 >> com35 0.5 - 1.0 >> com36 0.5 - 1.0 >> com37 1.0 - 2.0 >> com38 0.5 - 1.0 >> com39 0.5 - 1.0 >> com40 0.5 - 1.0 >> com41 0.5 - 1.0 >> com42 1.0 - 2.0 >> com43 1.0 - 2.0 >> com44 1.0 - 2.0 >> com45 < 0.5 >> com46 < 0.5 >> com47 < 0.5 >> com48 < 0.5 >> com49 < 0.5 >> com50 < 0.5 >> com51 < 0.5 >> com52 0.5 - 1.0 >> com53 0.5 - 1.0 >> com54 < 0.5 >> com55 < 0.5 >> com56 < 0.5 >> com57 < 0.5 >> com58 < 0.5 >> com59 0.5 - 1.0 >> com60 0.5 - 1.0 >> com61 1.0 - 2.0 >> com62 1.0 - 2.0 >> com63 0.5 - 1.0 >> com64 0.5 - 1.0 >> com65 0.5 - 1.0 >> com66 0.5 - 1.0 >> com67 0.5 - 1.0 >> com68 0.5 - 1.0 >> com69 0.5 - 1.0 >> com70 0.5 - 1.0 >> com71 < 0.5 >> com72 < 0.5 >> com73 < 0.5 >> com74 1.0 - 2.0 >> com75 0.5 - 1.0 >> com76 0.5 - 1.0 >> com77 1.0 - 2.0 >> com78 0.5 - 1.0 >> com79 0.5 - 1.0 >> com80 1.0 - 2.0 >> com81 1.0 - 2.0 >> com82 1.0 - 2.0 >> >> 2016-02-22 13:58 GMT+00:00 stephen sefick <ssefick at gmail.com>: >> >>> If memory serves me, dbFD returns a lot of output. What do you want to >>> plot? Also, please provide reproducible examples, so that we can help you >>> solve your R related queries. >>> kindest regards, >>> >>> Stephen >>> >>> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro < >>> fabio.monteiro1992 at gmail.com> wrote: >>> >>>> Hi >>>> >>>> thank you for your quick answer >>>> >>>> I finally managed to insert everything correctly and dbFD is caltulated. >>>> >>>> I'm now trying to plot the results. >>>> >>>> My objects are matrices. >>>> >>>> x is a functional trait and species matrice. a is the species and >>>> samples >>>> >>>> Thank you >>>> >>>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pikal at precheza.cz>: >>>> >>>> > Hi >>>> > >>>> > comments inline >>>> > >>>> > > -----Original Message----- >>>> > > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of >>>> Fabio >>>> > > Monteiro >>>> > > Sent: Monday, February 22, 2016 11:51 AM >>>> > > To: r-help at r-project.org >>>> > > Subject: [R] FD package >>>> > > >>>> > > Hi. >>>> > > >>>> > > First i would like to say that i'm really new in R. I recently >>>> started >>>> > > working with R and i'm using the FD package. >>>> > > >>>> > > I'm having some errors that doesn't make any sense. >>>> > > >>>> > > I have 2 matrix, one is the species with functional traits and the >>>> > > second one is the species and abundances. >>>> > >>>> > Your objects are matrices or data frames? From docs dbFD expects >>>> various >>>> > inputs byt they have to be properly formatted. >>>> > >>>> > > >>>> > > When I try to run the dbFD to calculate the functional diversity, >>>> the >>>> > > error is the number of species is different in x and a. >>>> > > >>>> > > I checked a lot of times and the number of species is the same and >>>> > > there are no mistakes in their names like spaces or caps. >>>> > >>>> > How did you checked? >>>> > >>>> > dim(trait) and dim(abund) >>>> > >>>> > shall give you the same number of rows in traits as columns in abund. >>>> > >>>> > If trait is vector, you need to use length instead of dim. >>>> > >>>> > > >>>> > > Can you help me? >>>> > >>>> > Without better description of your objects and code you used you >>>> hardly >>>> > get any answer. You can start by using examples from help page, which >>>> shall >>>> > work and see how your data differ from those examples. >>>> > >>>> > Cheers >>>> > Petr >>>> > >>>> > >>>> > > >>>> > > F?bio Monteiro >>>> > > >>>> > > [[alternative HTML version deleted]] >>>> > > >>>> > > ______________________________________________ >>>> > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>> > > https://stat.ethz.ch/mailman/listinfo/r-help >>>> > > PLEASE do read the posting guide http://www.R-project.org/posting- >>>> > > guide.html >>>> > > and provide commented, minimal, self-contained, reproducible code. >>>> > >>>> > ________________________________ >>>> > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a >>>> jsou >>>> > ur?eny pouze jeho adres?t?m. >>>> > Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? >>>> > neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho >>>> kopie >>>> > vyma?te ze sv?ho syst?mu. >>>> > Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento >>>> email >>>> > jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. >>>> > Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou >>>> modifikacemi >>>> > ?i zpo?d?n?m p?enosu e-mailu. >>>> > >>>> > V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: >>>> > - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? >>>> > smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. >>>> > - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? >>>> p?ijmout; >>>> > Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany >>>> > p??jemce s dodatkem ?i odchylkou. >>>> > - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve >>>> > v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. >>>> > - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za >>>> > spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? >>>> zmocn?n >>>> > nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi >>>> tohoto >>>> > emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo >>>> jejich >>>> > existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. >>>> > >>>> > This e-mail and any documents attached to it may be confidential and >>>> are >>>> > intended only for its intended recipients. >>>> > If you received this e-mail by mistake, please immediately inform its >>>> > sender. Delete the contents of this e-mail with all attachments and >>>> its >>>> > copies from your system. >>>> > If you are not the intended recipient of this e-mail, you are not >>>> > authorized to use, disseminate, copy or disclose this e-mail in any >>>> manner. >>>> > The sender of this e-mail shall not be liable for any possible damage >>>> > caused by modifications of the e-mail or by delay with transfer of the >>>> > email. >>>> > >>>> > In case that this e-mail forms part of business dealings: >>>> > - the sender reserves the right to end negotiations about entering >>>> into a >>>> > contract in any time, for any reason, and without stating any >>>> reasoning. >>>> > - if the e-mail contains an offer, the recipient is entitled to >>>> > immediately accept such offer; The sender of this e-mail (offer) >>>> excludes >>>> > any acceptance of the offer on the part of the recipient containing >>>> any >>>> > amendment or variation. >>>> > - the sender insists on that the respective contract is concluded only >>>> > upon an express mutual agreement on all its aspects. >>>> > - the sender of this e-mail informs that he/she is not authorized to >>>> enter >>>> > into any contracts on behalf of the company except for cases in which >>>> > he/she is expressly authorized to do so in writing, and such >>>> authorization >>>> > or power of attorney is submitted to the recipient or the person >>>> > represented by the recipient, or the existence of such authorization >>>> is >>>> > known to the recipient of the person represented by the recipient. >>>> > >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> ______________________________________________ >>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>> PLEASE do read the posting guide >>>> http://www.R-project.org/posting-guide.html >>>> and provide commented, minimal, self-contained, reproducible code. >>> >>> >>> >>> >>> -- >>> Stephen Sefick >>> ************************************************** >>> Auburn University >>> Biological Sciences >>> 331 Funchess Hall >>> Auburn, Alabama >>> 36849 >>> ************************************************** >>> sas0025 at auburn.edu >>> http://www.auburn.edu/~sas0025 >>> ************************************************** >>> >>> Let's not spend our time and resources thinking about things that are so >>> little or so large that all they really do for us is puff us up and make us >>> feel like gods. We are mammals, and have not exhausted the annoying little >>> problems of being mammals. >>> >>> -K. Mullis >>> >>> "A big computer, a complex algorithm and a long time does not equal >>> science." >>> >>> -Robert Gentleman >>> >>> >> > > > -- > Stephen Sefick > ************************************************** > Auburn University > Biological Sciences > 331 Funchess Hall > Auburn, Alabama > 36849 > ************************************************** > sas0025 at auburn.edu > http://www.auburn.edu/~sas0025 > ************************************************** > > Let's not spend our time and resources thinking about things that are so > little or so large that all they really do for us is puff us up and make us > feel like gods. We are mammals, and have not exhausted the annoying little > problems of being mammals. > > -K. Mullis > > "A big computer, a complex algorithm and a long time does not equal > science." > > -Robert Gentleman > >[[alternative HTML version deleted]]