?H ?ello, I am a begginer in R and I need to incorporate phylogeny into my data. So i tried to instal package CAIC.> install.packages("CAIC") > install.packages("CAIC", repos="http://R-Forge.R-project.org",type="source") > install.packages("CAIC", repos="http://R-Forge.R-project.org")But it doesn?t work. Installing package into ?C:/Users..../3.2? (as ?lib? is unspecified)Warning in install.packages : package ?CAIC? is not available (for R version 3.2.3) I see on forum one question on it: http://r.789695.n4.nabble.com/Installing-CAIC-tt3693455.html but the advice doesn?t work for me. Have you got any other idea? I have the newest version of R program (R version 3.2.3). Is it possible that the package is available just for older versions? I had also R version 3.1.2, but also it didn?t work. I am sorry, if it is stupid or easy question, but I am at the end with any idea. Thank a lot for every advice. Gabriela W. ? [[alternative HTML version deleted]]
I don't see a "CAIC" package on CRAN or bioconductor. Are you sure you got that right? Perhaps you meant another package? Or a function in another package? E.g. ape has a read.caic() function ... See https://cran.r-project.org/web/views/Phylogenetics.html B. (Please also read the posting guide ... ) On Feb 3, 2016, at 11:45 AM, Gabriela Wofkova <gabriela.wofkova at gmail.com> wrote:> ?H > ?ello, > > I am a begginer in R and I need to incorporate phylogeny into my data. So i > tried to instal package CAIC. > >> install.packages("CAIC") >> install.packages("CAIC", repos="http://R-Forge.R-project.org",type="source") >> install.packages("CAIC", repos="http://R-Forge.R-project.org") > > > But it doesn?t work. > > Installing package into ?C:/Users..../3.2? > (as ?lib? is unspecified)Warning in install.packages : > package ?CAIC? is not available (for R version 3.2.3) > > > > I see on forum one question on it: > > http://r.789695.n4.nabble.com/Installing-CAIC-tt3693455.html > > but the advice doesn?t work for me. > Have you got any other idea? > > I have the newest version of R program (R version 3.2.3). > > Is it possible that the package is available just for older versions? I had > also R version 3.1.2, but also it didn?t work. > > I am sorry, if it is stupid or easy question, but I am at the end with any > idea. > > > Thank a lot for every advice. > > > Gabriela W. > ? > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
You should consider the package "caper", which provides a CAIC. From the caper manual "The caper package implements the methods originally provided in the programs CAIC (Purvis and Rambaut, 1995b) and MacroCAIC (Agapow and Isaac, 2002)." Hope this helps. Gabriela Wofkova <gabriela.wofkova at gmail.com> Sent by: "R-help" <r-help-bounces at r-project.org> 02/03/2016 11:45 AM To r-help at r-project.org, cc Subject [R] Install.package CAIC ?H ?ello, I am a begginer in R and I need to incorporate phylogeny into my data. So i tried to instal package CAIC.> install.packages("CAIC") > install.packages("CAIC", repos="http://R-Forge.R-project.org",type="source")> install.packages("CAIC", repos="http://R-Forge.R-project.org")But it doesn?t work. Installing package into ?C:/Users..../3.2? (as ?lib? is unspecified)Warning in install.packages : package ?CAIC? is not available (for R version 3.2.3) I see on forum one question on it: http://r.789695.n4.nabble.com/Installing-CAIC-tt3693455.html but the advice doesn?t work for me. Have you got any other idea? I have the newest version of R program (R version 3.2.3). Is it possible that the package is available just for older versions? I had also R version 3.1.2, but also it didn?t work. I am sorry, if it is stupid or easy question, but I am at the end with any idea. Thank a lot for every advice. Gabriela W. ? [[alternative HTML version deleted]] ______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]]