Hi,
I was trying to remove the axis tick marks and their values using theme()
but haven't had much success. Here is sample code:
rx <- sample(1:100,10)
ry <- sample(1:100,10)
rz <- sample(letters[1:3],10,replace=T)
rdf <- data.frame(rx,ry,rz)
p <- ggplot(rdf,aes(x=rx,y=ry))
p1 <- p + geom_point(aes(shape=factor(rz),colour=factor(rz)),size=6) +
theme(axis.ticks = element_blank(), axis.text.x element_blank(),axis.text.y
= element_blank()) +
scale_shape_manual(values=rz) + theme_bw() +
labs(colour='rz',shape='rz')
p1
My session info:
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.5 (Yosemite)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils
datasets methods base
other attached packages:
[1] IlluminaHumanMethylation450kmanifest_0.4.0 biomaRt_2.26.1
[3] data.table_1.9.6 foreign_0.8-65
[5] preprocessCore_1.32.0 gtools_3.5.0
[7] BiocInstaller_1.20.1 ggdendro_0.1-17
[9] reshape_0.8.5 RnBeads_1.2.0
[11] plyr_1.8.3 methylumi_2.16.0
[13] minfi_1.16.0 bumphunter_1.10.0
[15] locfit_1.5-9.1 iterators_1.0.8
[17] foreach_1.4.3 Biostrings_2.38.2
[19] XVector_0.10.0 SummarizedExperiment_1.0.1
[21] lattice_0.20-33
FDb.InfiniumMethylation.hg19_2.2.0
[23] org.Hs.eg.db_3.2.3 RSQLite_1.0.0
[25] DBI_0.3.1
TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[27] GenomicFeatures_1.22.5 AnnotationDbi_1.32.0
[29] reshape2_1.4.1 scales_0.3.0
[31] Biobase_2.30.0 illuminaio_0.12.0
[33] matrixStats_0.15.0 limma_3.26.3
[35] gridExtra_2.0.0 gplots_2.17.0
[37] ggplot2_1.0.1 fields_8.3-5
[39] maps_3.0.0-2 spam_1.3-0
[41] ff_2.2-13 bit_1.1-12
[43] cluster_2.0.3 RColorBrewer_1.1-2
[45] MASS_7.3-43 GenomicRanges_1.22.1
[47] GenomeInfoDb_1.6.1 IRanges_2.4.4
[49] S4Vectors_0.8.3 BiocGenerics_0.16.1
loaded via a namespace (and not attached):
[1] nlme_3.1-121 bitops_1.0-6 tools_3.2.2
doRNG_1.6
[5] nor1mix_1.2-1 KernSmooth_2.23-15 colorspace_1.2-6
base64_1.1
[9] chron_2.3-47 pkgmaker_0.22 labeling_0.3
rtracklayer_1.30.1
[13] caTools_1.17.1 genefilter_1.52.0 quadprog_1.5-5
stringr_1.0.0
[17] digest_0.6.8 Rsamtools_1.22.0 siggenes_1.44.0
GEOquery_2.36.0
[21] mclust_5.1 BiocParallel_1.4.0 RCurl_1.95-4.7
magrittr_1.5
[25] futile.logger_1.4.1 Rcpp_0.12.2 munsell_0.4.2
proto_0.3-10
[29] stringi_1.0-1 zlibbioc_1.16.0 gdata_2.17.0
splines_3.2.2
[33] multtest_2.26.0 annotate_1.48.0 beanplot_1.2
igraph_1.0.1
[37] corpcor_1.6.8 rngtools_1.2.4 codetools_0.2-14
mixOmics_5.2.0
[41] futile.options_1.0.0 XML_3.98-1.3 lambda.r_1.1.7
gtable_0.1.2
[45] xtable_1.8-0 survival_2.38-3 ellipse_0.3-8
GenomicAlignments_1.6.1
[49] registry_0.3 rgl_0.95.1201
Am I setting the arguments for theme() incorrectly?
many thanks,
[[alternative HTML version deleted]]
Change the order of adding the themes from theme(axis.ticks=element_blank()) + theme_bw() to theme_bw() + theme(axis.ticks=element_blank()) because theme_bw() adds axis.ticks = element_line(colour = "black"). Bill Dunlap TIBCO Software wdunlap tibco.com On Mon, Dec 7, 2015 at 7:10 AM, Brian Smith <bsmith030465 at gmail.com> wrote:> Hi, > > I was trying to remove the axis tick marks and their values using theme() > but haven't had much success. Here is sample code: > > rx <- sample(1:100,10) > ry <- sample(1:100,10) > rz <- sample(letters[1:3],10,replace=T) > rdf <- data.frame(rx,ry,rz) > > p <- ggplot(rdf,aes(x=rx,y=ry)) > p1 <- p + geom_point(aes(shape=factor(rz),colour=factor(rz)),size=6) + > theme(axis.ticks = element_blank(), axis.text.x > element_blank(),axis.text.y = element_blank()) + > scale_shape_manual(values=rz) + theme_bw() + > labs(colour='rz',shape='rz') > p1 > > > My session info: > >> sessionInfo() > R version 3.2.2 (2015-08-14) > Platform: x86_64-apple-darwin13.4.0 (64-bit) > Running under: OS X 10.10.5 (Yosemite) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] grid stats4 parallel stats graphics grDevices utils > datasets methods base > > other attached packages: > [1] IlluminaHumanMethylation450kmanifest_0.4.0 biomaRt_2.26.1 > > [3] data.table_1.9.6 foreign_0.8-65 > > [5] preprocessCore_1.32.0 gtools_3.5.0 > > [7] BiocInstaller_1.20.1 ggdendro_0.1-17 > > [9] reshape_0.8.5 RnBeads_1.2.0 > > [11] plyr_1.8.3 methylumi_2.16.0 > > [13] minfi_1.16.0 bumphunter_1.10.0 > > [15] locfit_1.5-9.1 iterators_1.0.8 > > [17] foreach_1.4.3 Biostrings_2.38.2 > > [19] XVector_0.10.0 SummarizedExperiment_1.0.1 > > [21] lattice_0.20-33 > FDb.InfiniumMethylation.hg19_2.2.0 > [23] org.Hs.eg.db_3.2.3 RSQLite_1.0.0 > > [25] DBI_0.3.1 > TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2 > [27] GenomicFeatures_1.22.5 AnnotationDbi_1.32.0 > > [29] reshape2_1.4.1 scales_0.3.0 > > [31] Biobase_2.30.0 illuminaio_0.12.0 > > [33] matrixStats_0.15.0 limma_3.26.3 > > [35] gridExtra_2.0.0 gplots_2.17.0 > > [37] ggplot2_1.0.1 fields_8.3-5 > > [39] maps_3.0.0-2 spam_1.3-0 > > [41] ff_2.2-13 bit_1.1-12 > > [43] cluster_2.0.3 RColorBrewer_1.1-2 > > [45] MASS_7.3-43 GenomicRanges_1.22.1 > > [47] GenomeInfoDb_1.6.1 IRanges_2.4.4 > > [49] S4Vectors_0.8.3 BiocGenerics_0.16.1 > > > loaded via a namespace (and not attached): > [1] nlme_3.1-121 bitops_1.0-6 tools_3.2.2 > doRNG_1.6 > [5] nor1mix_1.2-1 KernSmooth_2.23-15 colorspace_1.2-6 > base64_1.1 > [9] chron_2.3-47 pkgmaker_0.22 labeling_0.3 > rtracklayer_1.30.1 > [13] caTools_1.17.1 genefilter_1.52.0 quadprog_1.5-5 > stringr_1.0.0 > [17] digest_0.6.8 Rsamtools_1.22.0 siggenes_1.44.0 > GEOquery_2.36.0 > [21] mclust_5.1 BiocParallel_1.4.0 RCurl_1.95-4.7 > magrittr_1.5 > [25] futile.logger_1.4.1 Rcpp_0.12.2 munsell_0.4.2 > proto_0.3-10 > [29] stringi_1.0-1 zlibbioc_1.16.0 gdata_2.17.0 > splines_3.2.2 > [33] multtest_2.26.0 annotate_1.48.0 beanplot_1.2 > igraph_1.0.1 > [37] corpcor_1.6.8 rngtools_1.2.4 codetools_0.2-14 > mixOmics_5.2.0 > [41] futile.options_1.0.0 XML_3.98-1.3 lambda.r_1.1.7 > gtable_0.1.2 > [45] xtable_1.8-0 survival_2.38-3 ellipse_0.3-8 > GenomicAlignments_1.6.1 > [49] registry_0.3 rgl_0.95.1201 > > > Am I setting the arguments for theme() incorrectly? > > many thanks, > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.