I am running r-markdown from r-studio and can't work out how to keep the figures. I mean I have a few figures in the document and would like to have them as separate pdf's too as I have been used to have them when using Sweave. best regards Witold -- Witold Eryk Wolski
It may not be elegant but you can just embed a png() command in the knitr code.
Code from RStudio example with png() command added.
```{r, echo=FALSE}
plot(cars)
png("~/Rjunk/pnd.png")
plot(cars)
dev.off()
```
John Kane
Kingston ON Canada
> -----Original Message-----
> From: wewolski at gmail.com
> Sent: Tue, 20 Oct 2015 18:18:04 +0200
> To: r-help at r-project.org
> Subject: [R] r-markdown - keeping figures
>
> I am running r-markdown from r-studio and can't work out how to keep
> the figures.
> I mean I have a few figures in the document and would like to have
> them as separate pdf's too as I have been used to have them when using
> Sweave.
>
>
>
> best regards
> Witold
>
>
> --
> Witold Eryk Wolski
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
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The figures should be saved somewhere. e.g. if you have x.Rmd, you should have a X_files/ folder with subfolders for the figures (e.g. X-html or X-latex). At least that's what I have. Bob On 20 October 2015 at 18:18, Witold E Wolski <wewolski at gmail.com> wrote:> I am running r-markdown from r-studio and can't work out how to keep > the figures. > I mean I have a few figures in the document and would like to have > them as separate pdf's too as I have been used to have them when using > Sweave. > > > > best regards > Witold > > > -- > Witold Eryk Wolski > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Bob O'Hara Biodiversity and Climate Research Centre Senckenberganlage 25 D-60325 Frankfurt am Main, Germany Tel: +49 69 798 40226 Mobile: +49 1515 888 5440 WWW: http://www.bik-f.de/root/index.php?page_id=219 Blog: http://occamstypewriter.org/boboh/ Journal of Negative Results - EEB: www.jnr-eeb.org
I think the default now is to not save them unless you set the fig.path chunk
option.
http://kbroman.org/knitr_knutshell/pages/Rmarkdown.html
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Sent from my phone. Please excuse my brevity.
On October 21, 2015 1:47:33 PM GMT+02:00, Bob O'Hara <rni.boh at
gmail.com> wrote:>The figures should be saved somewhere. e.g. if you have x.Rmd, you
>should have a X_files/ folder with subfolders for the figures (e.g.
>X-html or X-latex). At least that's what I have.
>
>Bob
>
>On 20 October 2015 at 18:18, Witold E Wolski <wewolski at gmail.com>
>wrote:
>> I am running r-markdown from r-studio and can't work out how to
keep
>> the figures.
>> I mean I have a few figures in the document and would like to have
>> them as separate pdf's too as I have been used to have them when
>using
>> Sweave.
>>
>>
>>
>> best regards
>> Witold
>>
>>
>> --
>> Witold Eryk Wolski
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.