Hello everybody, I want to use Rapidr package, it is an old package that uses the package requires GenomicRanges version 1.14.4. The current version of the package is GenomicRanges 1.20.6. There is some way of having both the actual and the previous packages installed? I tried to install the package locally, but I had problems with dependences, how can I deal with it? Would be possible have both versions installed and choose which one to use? Thanks in advance Pau Marc Mu?oz Torres skype: pau_marc http://www.linkedin.com/in/paumarc http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ [[alternative HTML version deleted]]
On 15/09/15 21:54, Pau Marc Mu?oz Torres wrote:> Hello everybody, > > I want to use Rapidr package, it is an old package that uses the > package requires GenomicRanges version 1.14.4. The current version of the > package is GenomicRanges 1.20.6. There is some way of having both the > actual and the previous packages installed? I tried to install the package > locally, but I had problems with dependences, how can I deal with it? Would > be possible have both versions installed and choose which one to use?To some extent you can do this by having different versions of packages installed in different libraries (directories), say "Lib1" and "Lib2", and then issuing commands of the form library(foo,lib.loc="Lib1") or library(foo,lib.loc="Lib2") However having different dependencies might mess up this strategy. I dunno. Perhaps younger and wiser heads will contribute some more definitive advice. Also my experience with this strategy is under a Linux OS. If you are running Windoze (as you probably are --- you didn't say) who knows what will go wrong? cheers, Rolf Turner -- Technical Editor ANZJS Department of Statistics University of Auckland Phone: +64-9-373-7599 ext. 88276
GenomicRanges is a Bioconductor package. Bioconductor packages are associated with R versions. GenomicRanges 1.14.4 is from Bioconductor 2.13 / R version 3.0. This is from 2013, which is Quite A Long Time Ago. The 'landing page' for this version of GenomicRanges is at http://bioconductor.org/packages/2.13/bioc/html/GenomicRanges.html Install R 3.0, then use biocLite() as described on the landing page; it will install the correct version of GenomicRanges in the R-3.0 directory. Install RapidR with R-3.0. The R-3.0 installation will not interfere with a current R installation. Martin Morgan -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Pau Marc Mu?oz Torres Sent: Tuesday, September 15, 2015 5:54 AM To: r-help at r-project.org Subject: [R] help with old libraries Hello everybody, I want to use Rapidr package, it is an old package that uses the package requires GenomicRanges version 1.14.4. The current version of the package is GenomicRanges 1.20.6. There is some way of having both the actual and the previous packages installed? I tried to install the package locally, but I had problems with dependences, how can I deal with it? Would be possible have both versions installed and choose which one to use? Thanks in advance Pau Marc Mu?oz Torres skype: pau_marc http://www.linkedin.com/in/paumarc http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ [[alternative HTML version deleted]] ______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Great martin, i just was going to ask to bioconductor guys! thanks! Pau Marc Mu?oz Torres skype: pau_marc http://www.linkedin.com/in/paumarc http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ 2015-09-15 13:52 GMT+02:00 Morgan, Martin <Martin.Morgan at roswellpark.org>:> GenomicRanges is a Bioconductor package. > > Bioconductor packages are associated with R versions. > > GenomicRanges 1.14.4 is from Bioconductor 2.13 / R version 3.0. This is > from 2013, which is Quite A Long Time Ago. > > The 'landing page' for this version of GenomicRanges is at > > http://bioconductor.org/packages/2.13/bioc/html/GenomicRanges.html > > Install R 3.0, then use biocLite() as described on the landing page; it > will install the correct version of GenomicRanges in the R-3.0 directory. > > Install RapidR with R-3.0. > > The R-3.0 installation will not interfere with a current R installation. > > Martin Morgan > > -----Original Message----- > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Pau Marc > Mu?oz Torres > Sent: Tuesday, September 15, 2015 5:54 AM > To: r-help at r-project.org > Subject: [R] help with old libraries > > Hello everybody, > > I want to use Rapidr package, it is an old package that uses the package > requires GenomicRanges version 1.14.4. The current version of the package > is GenomicRanges 1.20.6. There is some way of having both the actual and > the previous packages installed? I tried to install the package locally, > but I had problems with dependences, how can I deal with it? Would be > possible have both versions installed and choose which one to use? > > > Thanks in advance > > Pau Marc Mu?oz Torres > skype: pau_marc > http://www.linkedin.com/in/paumarc > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you.[[alternative HTML version deleted]]
On 15.09.2015 11:54, Pau Marc Mu?oz Torres wrote:> Hello everybody, > > I want to use Rapidr package, it is an old package that uses the > package requires GenomicRanges version 1.14.4. The current version of the > package is GenomicRanges 1.20.6. There is some way of having both the > actual and the previous packages installed? I tried to install the package > locally, but I had problems with dependences, how can I deal with it? Would > be possible have both versions installed and choose which one to use?Install the otehr version in a separate library and specify in your call to require() or library() which library to use. Best, Uwe Ligges> > Thanks in advance > > Pau Marc Mu?oz Torres > skype: pau_marc > http://www.linkedin.com/in/paumarc > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >