Hi Don,
You got caught by the old curly quotation marks vs plain quotations problem. My
guess is that at one point the code went through HTML or a word processor that
automatically changes straight quotes " to curly ? (if that comes
through).
A couple of long and painful debugging sessions a few years ago make me
sensitive to such problems.
John Kane
Kingston ON Canada
-----Original Message-----
From: dmck at u.washington.edu
Sent: Wed, 10 Jun 2015 12:07:27 -0700
To: rosita21 at gmail.com
Subject: Re: [R] graphs, need urgent help (deadline :( )
Here is code that IS tested. ?I am sending Rosa the (ugly) output in a separate
file. ?Crazy problems with argument order; I never figured out
exactly what was wrong.
# therapy plot
?plot(therapy.df$Region[therapy.df$sample==50],therapy.df$factor.a[therapy.df$sample==50],xlab="Region",ylab="factor",type="l",col=4,ylim=c(0,1.5))
lines(therapy.df$Region[therapy.df$sample==50],therapy.df$factor.b[therapy.df$sample==50],col=2)
lines(therapy.df$Region[therapy.df$sample==50],therapy.df$factor.c[therapy.df$sample==50],col=3)
lines(therapy.df$Region[therapy.df$sample==250],therapy.df$factor.a[therapy.df$sample==250],col=4,lty=2)
lines(therapy.df$Region[therapy.df$sample==250],therapy.df$factor.b[therapy.df$sample==250],col=2,lty=2)
lines(therapy.df$Region[therapy.df$sample==250],therapy.df$factor.c[therapy.df$sample==250],col=3,lty=2)
lines(therapy.df$Region[therapy.df$sample==1000],therapy.df$factor.a[therapy.df$sample==1000],col=4,lty=3)
lines(therapy.df$Region[therapy.df$sample==1000],therapy.df$factor.b[therapy.df$sample==1000],col=2,lty=3)
lines(therapy.df$Region[therapy.df$sample==1000],therapy.df$factor.c[therapy.df$sample==1000],col=3,lty=3)
legend(7,1.4,c("factor.a","factor.b","factor.c"),col=c(4,2,3),lty=1)
On Jun 10, 2015, at 11:03 AM, Rosa Oliveira <rosita21 at gmail.com>
wrote:
Sorry,
I taught I attached the cvs file :)
<therapy.csv>
Don,
I tried, but I got an error:
> my.data$Region
?[1] ?1 ?2 ?3 ?4 ?5 ?6 ?7 ?8 ?9 10 ?1 ?2 ?3 ?4 ?5 ?6 ?7 ?8 ?9 10 ?1 ?2 ?3 ?4 ?5
?6 ?7 ?8 ?9 10> my.data$sample
?[1] ? 50 ? 50 ? 50 ? 50 ? 50 ? 50 ? 50 ? 50 ? 50 ? 50 ?250 ?250 ?250 ?250 ?250
?250 ?250 ?250 ?250 ?250 1000 1000 1000 1000 1000 1000 1000 1000
[29] 1000 1000> my.data$factor.a
?[1] 0.895 0.811 0.685 0.777 0.600 0.466 0.446 0.392 0.256 0.198 0.136 0.121
0.875 0.777 0.685 0.626 0.550 0.466 0.384 0.330 0.060 0.138 0.065
[24] 0.034 0.931 0.124 0.060 0.028 0.017 0.014
>
plot(my.data$Region[my.data$sample==50],my.data$factor.a[my.data$sample==50],col=4,type=?l?,xlab=?Region?,ylab=?factor")
Error: unexpected input in
"plot(my.data$Region[my.data$sample==50],my.data$factor.a[my.data$sample==50],col=4,type=??
I?m really naive, right?
Best,
RO
Atenciosamente,
Rosa Oliveira
--?
____________________________________________________________________________
<smile.jpg>
Rosa Celeste dos Santos Oliveira,?
E-mail:?rosita21 at gmail.com
Tlm: +351 939355143?
Linkedin:?https://pt.linkedin.com/in/rosacsoliveira
____________________________________________________________________________
"Many admire, few know"
Hippocrates
On 10 Jun 2015, at 18:10, Don McKenzie <dmck at u.washington.edu> wrote:
For a legend, try (untested)
legend(0.15,0.9,c("factora","factorb","factorc"),col=c(4,2,3),lty=1)
If it overlaps data points move the first two arguments (0.15 and 0.9) around,
or change the ?ylim? argument in the plot() to ~1.2.
to avoid clutter, put the line-types information in the figure caption (IMO)
On Jun 10, 2015, at 10:03 AM, Don McKenzie <dmck at u.washington.edu>
wrote:
On Jun 10, 2015, at 9:08 AM, Rosa Oliveira <rosita21 at gmail.com> wrote:
Dear All,
I attach my data.
Dear Jim,?
when I run your code (even the one you send me, not in my data), I get:?
Don't know how to automatically pick scale for object of type function.
Defaulting to continuous
Error in data.frame(x = c(0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, ?:?
? arguments imply differing number of rows: 24, 0
Dear Don,
It?s meant that I will have 12 lines:?
3 factors - lines colors
with 3 different values of ?sample? for each - line types
[Three colors, one for each factor,
and ?three line types (lty=1,2,3), one for eachvalue of ?sample - preferable
dash, thin and thick).
in the X - I should have region (because I have 10 regions)
for each region I have the outcome of 3 different treatments (factor)
for each region and each treatment I have 3 different sample size.
But in your original post you had 4 sample sizes: 10,20,30,40.
I need to ?see? the the influence of the region in the treatment outcome for
each sample size.
So, at the end I should have 9 lines
3 red (1 dash, 1 thin, 1 thick) - concerning factor a (dash for sample size 50,
thin for sample size 250 and thick for sample size 1000)
3 blue (1 dash, 1 thin, 1 thick) - concerning factor b (dash for sample size 50,
thin for sample size 250 and thick for sample size 1000)
3 green (1 dash, 1 thin, 1 thick) - concerning factor c (dash for sample size
50, thin for sample size 250 and thick for sample size 1000)
Hope this time is clear.
I also though about doing 3 different graphs, each one for 1 different sample
size, and in that case I should have 3 graphs each one with 3 lines
1 red to factor a, 1 blue to factor b and 1 green to factor c.
Do you all think is better?
A matter of style perhaps but I would use dotplots because you have only two
data points for each ?line?. ?The lines will be misleading. ?You also could use?
panel plots, but given your skill set (unless someone wants to spend a fair bit
of time with you), it?s probably best to stay as simple as possible.
But given your original post (cleaned up) ? # untested: apologies for any typos
? ? ? ?region ? ? ? ? ? ? ?sample ? ? ? ? ?factora ? ? ? ? ?factorb? factorc
0.1 ? 10 ? ?? ?0.895 ?? 0.903 ?? 0.378
0.2 ? 10 ? ? ? 0.811 ? ?0.865 ? ?0.688
0.1 ? 20 ? ? ? 0.735 ?? 0.966 ?? 0.611
0.2 ? 20 ? ?? ?0.777 ? ?0.732 ? ?0.653
0.1 ? 30 ? ? ? 0.600 ?? 0.778 ?? 0.694
0.2 ? 30 ? ?? ?0.466 ? ?174.592? 0.461
0.1 ? 40 ? ?? ?0.446 ?? 0.432 ?? 0.693
0.2 ? 40 ? ?? ?0.392 ?? 0.294 ? ?0.686
plot(my.data$region[my.data$sample==10],my.data$factora[my.data$sample==10],col=4,type=?l?,ylim=c(0,1),xlab=?region?,ylab=?factor")
lines(my.data$region[my.data$sample==10],my.data$factorb[my.data$sample==10],col=2)
lines(my.data$region[my.data$sample==10],my.data$factorc[my.data$sample==10],col=3)
lines(my.data$region[my.data$sample==20],my.data$factora[my.data$sample==20],col=4,lty=2)
lines(my.data$region[my.data$sample==20],my.data$factorb[my.data$sample==20],col=2,lty=2)
lines(my.data$region[my.data$sample==20],my.data$factorc[my.data$sample==20],col=3,lty=2)
# ?Now do two more groups of 3, changing the parameter ?lty? to 3 and then 4
# Look at the syntax and note what changes and what stays constant. Do you see
how this works?
# there will be what looks like a vertical line where sample = 30 and factorb =
174.592. ?Do you see why?
# then you will need a legend
Nonetheless I can?t do it :(
best,
RO
Atenciosamente,
Rosa Oliveira
--?
____________________________________________________________________________
<smile.jpg>
Rosa Celeste dos Santos Oliveira,?
E-mail:?rosita21 at gmail.com
Tlm: +351 939355143?
Linkedin:?https://pt.linkedin.com/in/rosacsoliveira
____________________________________________________________________________
"Many admire, few know"
Hippocrates
On 10 Jun 2015, at 14:13, John Kane <jrkrideau at inbox.com> wrote:
Hi Jim,
I was looking at that last night and had the same problem of visualizing what
Rosa needed. ?
Hi Rosa
This is nothing like what you wanted and I really don't understand your data
but would something like this work as a substitute or am I completely lost?
dat1 ?<- ?structure(list(region = c(0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1,?
0.2), sample = c(10L, 10L, 20L, 20L, 30L, 30L, 40L, 40L), factora = c(0.895,?
0.811, 0.735, 0.777, 0.6, 0.466, 0.446, 0.392), factorb = c(0.903,?
0.865, 0.966, 0.732, 0.778, 0.592, 0.432, 0.294), factorc = c(0.37,?
0.688, 0.611, 0.653, 0.694, 0.461, 0.693, 0.686)), .Names =
c("region",?
"sample", "factora", "factorb",
"factorc"), class = "data.frame", row.names = c(NA,?
-8L))
mdat1 ?<- ? melt(dat1, id.var = c("region", "sample"),
? ? ? ? ? ? ? ? ? ?variable.name = "factor",
? ? ? ? ? ? ? ? ? ?value.name = "value")
str(mdat1)
ggplot(mdat1, aes(region, value, colour = factor)) +
? ? ? ? ? ? ? ?geom_line() + facet_grid(sample ~ .)
John Kane
Kingston ON Canada
-----Original Message-----
From:?drjimlemon at gmail.com
Sent: Wed, 10 Jun 2015 20:51:52 +1000
To:?rosita21 at gmail.com
Subject: Re: [R] graphs, need urgent help (deadline :( )
Hi Rosa,
Like Don, I can't work out what you want and I don't even have the
picture. For example, your specification of color and line type leaves
only one point for each color and line type, and the line from one
point to the same point is not going to show up. Here is a possibility
that may lead (eventually) to a solution.
library(plotrix)
par(tcl=-0.1)
gap.plot(x=rep(seq(10,45,by=5),3),
y=unlist(my.data[,c("factora","factorb","factorc")]),
main="A plot of factorial mystery",
gap=c(1.1,174),ylim=c(0,175),ylab="factor
score",xlab="Group",
xticlab=c(" \n0.1\n10"," \n0.2\n10","
\n0.1\n20"," \n0.2\n20",
?" \n0.1\n30"," \n0.2\n30"," \n0.1\n40","
\n0.2\n40"),
ytics=c(0,0.5,1,174.59),pch=rep(1:3,each=8),col=rep(c(4,2,3),each=8))
mtext(c("Region","Sample"),side=1,at=6,line=c(0,1))
lines(seq(10,45,by=5),my.data$factora,col=4)
lines(seq(10,45,by=5),my.data$factorb[c(1:5,NA,7,8)],col=2)
lines(seq(10,45,by=5),my.data$factorc,col=3)
Jim
On Wed, Jun 10, 2015 at 10:53 AM, Rosa Oliveira <rosita21 at gmail.com>
wrote:
Dear Don and all,
I?ve read the tutorial and tried several codes before posting :)
I?m really naive.
what I was trying to : ?is something like the graph in the picture I
drawee.
Is it more clear now?
Atenciosamente,
Rosa Oliveira
--
____________________________________________________________________________
Rosa Celeste dos Santos Oliveira,
E-mail:?rosita21 at gmail.com?<mailto:rosita21 at gmail.com>
Tlm: +351 939355143
Linkedin:?https://pt.linkedin.com/in/rosacsoliveira
<https://pt.linkedin.com/in/rosacsoliveira>
____________________________________________________________________________
"Many admire, few know"
Hippocrates
On 09 Jun 2015, at 19:23, Don McKenzie <dmck at u.washington.edu
<mailto:dmck at u.washington.edu>> wrote:
The answer lies in learning to use the help (and knowing where to
start). ?Did you look at the tutorial that comes with the R
installation?
?plot
?lines
?par
In the last, look for the descriptions of ?col? and ?lty?.
Using plot() and lines(), and subsetting the four unique values of
?sample?, you can create your lines.
Here is a crude start, assuming your columns are part of a data frame
called ?my.data?. ? Untested...
plot(my.data$region[my.data$sample==10],my.data$factora[my.data$sample==10],col=4)
# blue line, not dashed
.
.
.
lines(my.data$region[my.data$sample==20],my.data$factorb[my.data$sample==20],col=2,lty=2)
# red dashed line
On Jun 9, 2015, at 10:36 AM, Rosa Oliveira <rosita21 at gmail.com
<mailto:rosita21 at gmail.com>> wrote:
Hi,
another naive question (i?m pretty sure :( )
I?m trying to plot a multiple line graph:
? ? ? ?region ? ? ? ? ? ? ?sample ? ? ? ? ?factora ? ? ? ? ?factorb
factorc
0.1 ?10 ? ? ?0.895 ? 0.903 ? 0.378
0.2 ?10 ? ? ?0.811 ? 0.865 ? 0.688
0.1 ?20 ? ? ?0.735 ? 0.966 ? 0.611
0.2 ?20 ? ? ?0.777 ? 0.732 ? 0.653
0.1 ?30 ? ? ?0.600 ? 0.778 ? 0.694
0.2 ?30 ? ? ?0.466 ? 174.592 0.461
0.1 ?40 ? ? ?0.446 ? 0.432 ? 0.693
0.2 ?40 ? ? ?0.392 ? 0.294 ? 0.686
The first column should be the independent variable, the second should
compute a bold line for sample(10) and dash line for sample 20.
What about the other two values of ?sample??
The others variables are outcomes for each of the first scenarios, and
so it should: the 3rd, 4th and 5th columns should be blue, red and
green respectively.
Resume :)
I should have a graph, in the x-axe should have the region and in the
y axe, the factor.
Lines:
? ? 1 - blue and bold for region 0.1, sample 10 and factor a
? ? 2 - blue and dash for region 0.2, sample 10 and factor a
? ? 3 - red and bold for region 0.1, sample 10 and factor b
? ? 4 - red and dash for region 0.2, sample 10 and factor b
? ? 5 - green and bold for region 0.1, sample 10 and factor c
? ? 6 - green and dash for region 0.2, sample 10 and factor c
Not consistent with what you said above. These are no longer lines, but
points.
nonetheless the independent variable is nominal, I should plot a line
graph.
Can anyone help me please?
I have my file as a cvs file, so I first read that file (that I know
how to do :)).
But I have it in that format.
Best,
RO
Atenciosamente,
Rosa Oliveira
--
____________________________________________________________________________
Rosa Celeste dos Santos Oliveira,
E-mail:?rosita21 at gmail.com?<mailto:rosita21 at gmail.com>
Tlm: +351 939355143
Linkedin:?https://pt.linkedin.com/in/rosacsoliveira
<https://pt.linkedin.com/in/rosacsoliveira>
____________________________________________________________________________
"Many admire, few know"
Hippocrates
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