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BenedettaB24 .

2015-Mar-25 14:02 UTC

[R] Graph with ggplot2.

Dear all,

I want to run ggplot2 in one of my file.
I do this:

mergefile<- read.csv("path of my file/name.csv")

library(ggplot2)   to import my library

ggplot(percent, aes(x=factor(Cell.lines), y=Percentage, vjust=-0.5,
fill=Prostate )) + geom_bar(colour="black", stat="identity",
position=position_dodge(), size=.3)+ylim(0%,100%)+xlab("Prostate cell
lines")+ylab("Percentage of
overlapping")+ggtitle("Comparison between
cell lines against the prostate cancer lines from DNase
esperiment")+theme_bw()+theme(axis.text.x=element_text(angle = 90,
vjust = 0.5))

i used this command three times, but now is not working, the error reported
is:

Error: unexpected ')' in "ggplot(percent, aes(x=factor(Cell.lines),
y=Percentage, vjust=-0.5, fill=Prostate )) + geom_bar(colour="black",
stat="identity", position=position_dodge(),
size=.3)+ylim(0%,100%)"


Can some one help me? any suggestions?

Thanks a lot!

Best regards, Benedetta

	[[alternative HTML version deleted]]

Jeff Newmiller

2015-Mar-25 15:14 UTC

head link

[R] Graph with ggplot2.

It is difficult to read your code because the HTML format messes it up, but I
think your ggplot function call is missing a parenthesis between fill=Prostate
and the + sign.
---------------------------------------------------------------------------
Jeff Newmiller                        The     .....       .....  Go Live...
DCN:<jdnewmil at dcn.davis.ca.us>        Basics: ##.#.       ##.#.  Live
Go...
                                      Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/Batteries            O.O#.       #.O#.  with
/Software/Embedded Controllers)               .OO#.       .OO#.  rocks...1k
--------------------------------------------------------------------------- 
Sent from my phone. Please excuse my brevity.

On March 25, 2015 7:02:50 AM PDT, "BenedettaB24 ."
<benedetta.brunetti at gmail.com> wrote:>Dear all,
>
>I want to run ggplot2 in one of my file.
>I do this:
>
>mergefile<- read.csv("path of my file/name.csv")
>
>library(ggplot2)   to import my library
>
>ggplot(percent, aes(x=factor(Cell.lines), y=Percentage, vjust=-0.5,
>fill=Prostate )) + geom_bar(colour="black",
stat="identity",
>position=position_dodge(), size=.3)+ylim(0%,100%)+xlab("Prostate cell
>lines")+ylab("Percentage of
overlapping")+ggtitle("Comparison between
>cell lines against the prostate cancer lines from DNase
>esperiment")+theme_bw()+theme(axis.text.x=element_text(angle = 90,
>vjust = 0.5))
>
>i used this command three times, but now is not working, the error
>reported
>is:
>
>Error: unexpected ')' in "ggplot(percent,
aes(x=factor(Cell.lines),
>y=Percentage, vjust=-0.5, fill=Prostate )) +
geom_bar(colour="black",
>stat="identity", position=position_dodge(),
size=.3)+ylim(0%,100%)"
>
>
>Can some one help me? any suggestions?
>
>Thanks a lot!
>
>Best regards, Benedetta
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

Thierry Onkelinx

2015-Mar-25 15:17 UTC

head link

[R] Graph with ggplot2.

You need to define limits as defined in the data. ylim(0, 1) instead of
ylim(0%, 100%)

ylim(0%, 100%) is incorrect R syntax.

ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium

To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey

2015-03-25 15:02 GMT+01:00 BenedettaB24 . <benedetta.brunetti at
gmail.com>:
> Dear all,
>
> I want to run ggplot2 in one of my file.
> I do this:
>
> mergefile<- read.csv("path of my file/name.csv")
>
> library(ggplot2)   to import my library
>
> ggplot(percent, aes(x=factor(Cell.lines), y=Percentage, vjust=-0.5,
> fill=Prostate )) + geom_bar(colour="black",
stat="identity",
> position=position_dodge(), size=.3)+ylim(0%,100%)+xlab("Prostate cell
> lines")+ylab("Percentage of
overlapping")+ggtitle("Comparison between
> cell lines against the prostate cancer lines from DNase
> esperiment")+theme_bw()+theme(axis.text.x=element_text(angle = 90,
> vjust = 0.5))
>
> i used this command three times, but now is not working, the error reported
> is:
>
> Error: unexpected ')' in "ggplot(percent,
aes(x=factor(Cell.lines),
> y=Percentage, vjust=-0.5, fill=Prostate )) +
geom_bar(colour="black",
> stat="identity", position=position_dodge(),
size=.3)+ylim(0%,100%)"
>
>
> Can some one help me? any suggestions?
>
> Thanks a lot!
>
> Best regards, Benedetta
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
	[[alternative HTML version deleted]]

S Ellison

2015-Mar-25 15:19 UTC

head link

[R] Graph with ggplot2.

> i used this command three times, clearly not exactly this, if it's stopped working ...
> but now is not working, the error reported is:
> Error: unexpected ')' in "ggplot(percent,
aes(x=factor(Cell.lines), y=Percentage,
> vjust=-0.5, fill=Prostate )) + geom_bar(colour="black",
stat="identity",
> position=position_dodge(), size=.3)+ylim(0%,100%)"
> 
> 
> Can some one help me? any suggestions?
You have an unexpected right parenthesis at 100%). Look for something wrong
there or before that - often an unmatched parenthesis, string terminator or
operator terminator - would be sensible.

As a clue, you could think about what '%' means in R. It does NOT mean
'percent'

S Ellison


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JLucke at ria.buffalo.edu

2015-Mar-25 15:27 UTC

head link

[R] Graph with ggplot2.

ylim(0%,100%) is not valild.  It should be ylim(0,100).



Jeff Newmiller <jdnewmil at dcn.davis.ca.us> 
Sent by: "R-help" <r-help-bounces at r-project.org>
03/25/2015 11:14 AM

To
"BenedettaB24 ." <benedetta.brunetti at gmail.com>, "r-help
at r-project.org"
<r-help at r-project.org>, 
cc

Subject
Re: [R] Graph with ggplot2.






It is difficult to read your code because the HTML format messes it up, 
but I think your ggplot function call is missing a parenthesis between 
fill=Prostate and the + sign.
---------------------------------------------------------------------------
Jeff Newmiller                        The     .....       .....  Go 
Live...
DCN:<jdnewmil at dcn.davis.ca.us>        Basics: ##.#.       ##.#.  Live 
Go...
                                      Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/Batteries            O.O#.       #.O#.  with
/Software/Embedded Controllers)               .OO#.       .OO#. rocks...1k
--------------------------------------------------------------------------- 

Sent from my phone. Please excuse my brevity.

On March 25, 2015 7:02:50 AM PDT, "BenedettaB24 ." 
<benedetta.brunetti at gmail.com> wrote:>Dear all,
>
>I want to run ggplot2 in one of my file.
>I do this:
>
>mergefile<- read.csv("path of my file/name.csv")
>
>library(ggplot2)   to import my library
>
>ggplot(percent, aes(x=factor(Cell.lines), y=Percentage, vjust=-0.5,
>fill=Prostate )) + geom_bar(colour="black",
stat="identity",
>position=position_dodge(), size=.3)+ylim(0%,100%)+xlab("Prostate cell
>lines")+ylab("Percentage of
overlapping")+ggtitle("Comparison between
>cell lines against the prostate cancer lines from DNase
>esperiment")+theme_bw()+theme(axis.text.x=element_text(angle = 90,
>vjust = 0.5))
>
>i used this command three times, but now is not working, the error
>reported
>is:
>
>Error: unexpected ')' in "ggplot(percent,
aes(x=factor(Cell.lines),
>y=Percentage, vjust=-0.5, fill=Prostate )) +
geom_bar(colour="black",
>stat="identity", position=position_dodge(),
size=.3)+ylim(0%,100%)"
>
>
>Can some one help me? any suggestions?
>
>Thanks a lot!
>
>Best regards, Benedetta
>
>                [[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
______________________________________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide 
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


	[[alternative HTML version deleted]]

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