Hi, I'm trying to install diveRsity package in our R installation. however it always fails with the error message "Unsupported Fortran 90 compiler or Fortran 90". Below is the full output. Appreciate any help. R R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.> install.packages("diversity")--- Please select a CRAN mirror for use in this session --- Warning messages: 1: package ?diversity? is not available (for R version 3.1.2) 2: Perhaps you meant ?diveRsity? ?> install.packages("diveRsity")also installing the dependencies ?glasso?, ?qgraph? trying URL 'http://cran.rstudio.com/src/contrib/glasso_1.8.tar.gz' Content type 'application/x-gzip' length 41768 bytes (40 Kb) opened URL =================================================downloaded 40 Kb trying URL 'http://cran.rstudio.com/src/contrib/qgraph_1.3.1.tar.gz' Content type 'application/x-gzip' length 211062 bytes (206 Kb) opened URL =================================================downloaded 206 Kb trying URL 'http://cran.rstudio.com/src/contrib/diveRsity_1.9.73.tar.gz' Content type 'application/x-gzip' length 1330144 bytes (1.3 Mb) opened URL =================================================downloaded 1.3 Mb * installing *source* package ?glasso? ... ** package ?glasso? successfully unpacked and MD5 sums checked This package requires a fortran 90 compiler. We assume that your fortran 90 environment is set up appropriately. Reference: Section on 'Using F95 code' in R-exts manual. R_HOME is /app1/centos6.3/gnu/apps/R-3.1.2/lib64/R Unsupported Fortran 90 compiler or Fortran 90 compilers unavailable! Stop! ERROR: configuration failed for package ?glasso? * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/glasso? ERROR: dependency ?glasso? is not available for package ?qgraph? * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/qgraph? ERROR: dependency ?qgraph? is not available for package ?diveRsity? * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/diveRsity? The downloaded source packages are in ?/tmp/Rtmp2IAilr/downloaded_packages? Warning messages: 1: In install.packages("diveRsity") : installation of package ?glasso? had non-zero exit status 2: In install.packages("diveRsity") : installation of package ?qgraph? had non-zero exit status 3: In install.packages("diveRsity") : installation of package ?diveRsity? had non-zero exit status Regards Srikanth. [[alternative HTML version deleted]]
On 16/03/2015 10:38, Srikanth Gumma wrote:> Hi, > > I'm trying to install diveRsity package in our R installation. however it > always fails with the error message "Unsupported Fortran 90 compiler or > Fortran 90". Below is the full output. Appreciate any help.Ask the maintainer of the package concerned (glasso). Its way of detecting the complier is flaky (and does not meet current CRAN requirements on cross-platform portability).> > R > > R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" > Copyright (C) 2014 The R Foundation for Statistical Computing > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > >> install.packages("diversity") > --- Please select a CRAN mirror for use in this session --- > Warning messages: > 1: package ?diversity? is not available (for R version 3.1.2) > 2: Perhaps you meant ?diveRsity? ? >> install.packages("diveRsity") > also installing the dependencies ?glasso?, ?qgraph? > > trying URL 'http://cran.rstudio.com/src/contrib/glasso_1.8.tar.gz' > Content type 'application/x-gzip' length 41768 bytes (40 Kb) > opened URL > =================================================> downloaded 40 Kb > > trying URL 'http://cran.rstudio.com/src/contrib/qgraph_1.3.1.tar.gz' > Content type 'application/x-gzip' length 211062 bytes (206 Kb) > opened URL > =================================================> downloaded 206 Kb > > trying URL 'http://cran.rstudio.com/src/contrib/diveRsity_1.9.73.tar.gz' > Content type 'application/x-gzip' length 1330144 bytes (1.3 Mb) > opened URL > =================================================> downloaded 1.3 Mb > > * installing *source* package ?glasso? ... > ** package ?glasso? successfully unpacked and MD5 sums checked > This package requires a fortran 90 compiler. We assume > that your fortran 90 environment is set up appropriately. > Reference: Section on 'Using F95 code' in R-exts manual. > R_HOME is /app1/centos6.3/gnu/apps/R-3.1.2/lib64/R > Unsupported Fortran 90 compiler or Fortran 90 > compilers unavailable! Stop! > ERROR: configuration failed for package ?glasso? > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/glasso? > ERROR: dependency ?glasso? is not available for package ?qgraph? > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/qgraph? > ERROR: dependency ?qgraph? is not available for package ?diveRsity? > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/diveRsity? > > The downloaded source packages are in > ?/tmp/Rtmp2IAilr/downloaded_packages? > Warning messages: > 1: In install.packages("diveRsity") : > installation of package ?glasso? had non-zero exit status > 2: In install.packages("diveRsity") : > installation of package ?qgraph? had non-zero exit status > 3: In install.packages("diveRsity") : > installation of package ?diveRsity? had non-zero exit status > > Regards > Srikanth. > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Emeritus Professor of Applied Statistics, University of Oxford 1 South Parks Road, Oxford OX1 3TG, UK
Thank you Prof. Brian Ripley. I'm writing a mail to glasso maintainer. Let me see if I could get some help from them. Regards Srikanth. On Mon, 16 Mar 2015 at 19:21 Prof Brian Ripley <ripley at stats.ox.ac.uk> wrote:> On 16/03/2015 10:38, Srikanth Gumma wrote: > > Hi, > > > > I'm trying to install diveRsity package in our R installation. however it > > always fails with the error message "Unsupported Fortran 90 compiler or > > Fortran 90". Below is the full output. Appreciate any help. > > Ask the maintainer of the package concerned (glasso). Its way of > detecting the complier is flaky (and does not meet current CRAN > requirements on cross-platform portability). > > > > > R > > > > R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" > > Copyright (C) 2014 The R Foundation for Statistical Computing > > Platform: x86_64-unknown-linux-gnu (64-bit) > > > > R is free software and comes with ABSOLUTELY NO WARRANTY. > > You are welcome to redistribute it under certain conditions. > > Type 'license()' or 'licence()' for distribution details. > > > > Natural language support but running in an English locale > > > > R is a collaborative project with many contributors. > > Type 'contributors()' for more information and > > 'citation()' on how to cite R or R packages in publications. > > > > Type 'demo()' for some demos, 'help()' for on-line help, or > > 'help.start()' for an HTML browser interface to help. > > Type 'q()' to quit R. > > > >> install.packages("diversity") > > --- Please select a CRAN mirror for use in this session --- > > Warning messages: > > 1: package ?diversity? is not available (for R version 3.1.2) > > 2: Perhaps you meant ?diveRsity? ? > >> install.packages("diveRsity") > > also installing the dependencies ?glasso?, ?qgraph? > > > > trying URL 'http://cran.rstudio.com/src/contrib/glasso_1.8.tar.gz' > > Content type 'application/x-gzip' length 41768 bytes (40 Kb) > > opened URL > > =================================================> > downloaded 40 Kb > > > > trying URL 'http://cran.rstudio.com/src/contrib/qgraph_1.3.1.tar.gz' > > Content type 'application/x-gzip' length 211062 bytes (206 Kb) > > opened URL > > =================================================> > downloaded 206 Kb > > > > trying URL 'http://cran.rstudio.com/src/contrib/diveRsity_1.9.73.tar.gz' > > Content type 'application/x-gzip' length 1330144 bytes (1.3 Mb) > > opened URL > > =================================================> > downloaded 1.3 Mb > > > > * installing *source* package ?glasso? ... > > ** package ?glasso? successfully unpacked and MD5 sums checked > > This package requires a fortran 90 compiler. We assume > > that your fortran 90 environment is set up appropriately. > > Reference: Section on 'Using F95 code' in R-exts manual. > > R_HOME is /app1/centos6.3/gnu/apps/R-3.1.2/lib64/R > > Unsupported Fortran 90 compiler or Fortran 90 > > compilers unavailable! Stop! > > ERROR: configuration failed for package ?glasso? > > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/glasso? > > ERROR: dependency ?glasso? is not available for package ?qgraph? > > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/qgraph? > > ERROR: dependency ?qgraph? is not available for package ?diveRsity? > > * removing ?/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/ > diveRsity? > > > > The downloaded source packages are in > > ?/tmp/Rtmp2IAilr/downloaded_packages? > > Warning messages: > > 1: In install.packages("diveRsity") : > > installation of package ?glasso? had non-zero exit status > > 2: In install.packages("diveRsity") : > > installation of package ?qgraph? had non-zero exit status > > 3: In install.packages("diveRsity") : > > installation of package ?diveRsity? had non-zero exit status > > > > Regards > > Srikanth. > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > > -- > Brian D. Ripley, ripley at stats.ox.ac.uk > Emeritus Professor of Applied Statistics, University of Oxford > 1 South Parks Road, Oxford OX1 3TG, UK >[[alternative HTML version deleted]]