Aman Gill
2015-Mar-14 15:34 UTC
[R] Help with error: arguments imply differing number of rows
Thanks for the reply. The results of str() are indeed the same. Is there anything else I can check that might explain the difference?> str(phyl_tree)List of 4 $ edge : int [1:15, 1:2] 10 11 12 13 14 14 13 12 15 15 ... $ Nnode : int 7 $ tip.label : chr [1:9] "Heliantheae" "Eupatorieae" "Helenieae" "Gnaphalieae" ... $ edge.length: num [1:15] 1 1 1 1 1 1 2 1 2 1 ... - attr(*, "class")= chr "phylo" - attr(*, "order")= chr "cladewise"> > str(chem_tree)List of 4 $ edge : int [1:15, 1:2] 10 11 12 13 14 15 15 14 16 16 ... $ Nnode : int 7 $ tip.label : chr [1:9] "Heliantheae" "Helenieae" "Eupatorieae" "Astereae" ... $ edge.length: num [1:15] 1 2 1 1 1 1 1 1 1 1 ... - attr(*, "class")= chr "phylo" - attr(*, "order")= chr "cladewise"> str(phyl_data)int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:35] "Uroleucon_aeneum" "Uroleucon_aff_atripes" "Uroleucon_amamianum" "Uroleucon_ambrosiae" ... ..$ : chr [1:9] "Heliantheae" "Eupatorieae" "Helenieae" "Gnaphalieae" ...> > str(chem_data)int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:35] "Uroleucon_aeneum" "Uroleucon_aff_atripes" "Uroleucon_amamianum" "Uroleucon_ambrosiae" ... ..$ : chr [1:9] "Heliantheae" "Helenieae" "Eupatorieae" "Astereae" ... On Fri, Mar 13, 2015 at 7:31 AM, PIKAL Petr <petr.pikal at precheza.cz> wrote:> Hi > > Without further information you probably do not get answers. Everything > seems to be same so the only reason can be that the objects seems to be > same but they have some inner distinctions, maybe type of variables. > > Are results of > > str(your.objects) > > same in equivalent objects? > > Cheers > Petr > > > -----Original Message----- > > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Aman > > Gill > > Sent: Thursday, March 12, 2015 6:08 PM > > To: r-help at r-project.org > > Subject: [R] Help with error: arguments imply differing number of rows > > > > Hello, > > > > I am stuck trying to run an analysis using the package picante. I am > > running two very similar analyses. One works as expected, but when I > > try > > the other, I get the error: > > > > Error in data.frame(PD = PDs, SR = SR) : > > arguments imply differing number of rows: 34, 35 > > > > This is strange to me since the data matrix is the same for both > > analyses > > (numbers of rows and columns are the same; the only difference is the > > order > > of the columns). Each analyses requires a phylogenetic tree (.tre > > file), > > and each tree is very similar. Any thoughts as to what's causing this > > problem? The problem may be specific to the function I'm using [pd()], > > but > > since the error is a data.frame error I thought I'd ask here. Here is > > the > > code I'm using: > > > > This works: > > phyl_tree <- read.nexus("phyl.tre") > > phyl_data <- as.matrix(read.table("phyl_matrix.txt"), header=TRUE, sep > > > > "\t") > > pd.result <- pd(phyl_data, phyl_tree, include.root = TRUE) > > > > This fails (this matrix.txt file is the same as above, except that > > columns > > are ordered to match the tree; I have also used the above matrix.txt > > file) > > chem_tree <- read.nexus("chem.tre") > > chem_data <- as.matrix(read.table("chem_matrix.txt"), header=TRUE, sep > > > > "\t") > > pd_chem.result <- pd(chem_data, chem_tree, include.root = TRUE) > > > > ERROR: > > Error in data.frame(PD = PDs, SR = SR) : > > arguments imply differing number of rows: 34, 35 > > > > > > To illustrate that the data for each run are very similar (row and > > column > > names are also the same in both data files): > > > > > phyl_tree > > > > Phylogenetic tree with 9 tips and 7 internal nodes. > > > > Tip labels: > > Heliantheae, Eupatorieae, Helenieae, Gnaphalieae, Anthemideae, > > Astereae, ... > > Node labels: > > root, minCyn, minCic, HelEurHel, HelEur, GnaAnthAst, ... > > > > Rooted; includes branch lengths. > > > > > nrow(phyl_data) > > [1] 35 > > > ncol(phyl_data) > > [1] 9 > > > class(phyl_data) > > [1] "matrix" > > > > > > > chem_tree > > > > Phylogenetic tree with 9 tips and 7 internal nodes. > > > > Tip labels: > > Heliantheae, Helenieae, Eupatorieae, Astereae, Gnaphlieae, Senecioneae, > > ... > > Node labels: > > root, minC, minAnth, minSen, minGna, HelHel, ... > > > > Rooted; includes branch lengths. > > > > > nrow(chem_data) > > [1] 35 > > > ncol(chem_data) > > [1] 9 > > > class(chem_data) > > [1] "matrix" > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/posting- > > guide.html > > and provide commented, minimal, self-contained, reproducible code. > > ________________________________ > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou > ur?eny pouze jeho adres?t?m. > Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? > neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho kopie > vyma?te ze sv?ho syst?mu. > Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento email > jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. > Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou modifikacemi > ?i zpo?d?n?m p?enosu e-mailu. > > V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: > - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? > smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. > - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? p?ijmout; > Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany > p??jemce s dodatkem ?i odchylkou. > - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve > v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. > - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za > spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? zmocn?n > nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi tohoto > emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich > existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. > > This e-mail and any documents attached to it may be confidential and are > intended only for its intended recipients. > If you received this e-mail by mistake, please immediately inform its > sender. Delete the contents of this e-mail with all attachments and its > copies from your system. > If you are not the intended recipient of this e-mail, you are not > authorized to use, disseminate, copy or disclose this e-mail in any manner. > The sender of this e-mail shall not be liable for any possible damage > caused by modifications of the e-mail or by delay with transfer of the > email. > > In case that this e-mail forms part of business dealings: > - the sender reserves the right to end negotiations about entering into a > contract in any time, for any reason, and without stating any reasoning. > - if the e-mail contains an offer, the recipient is entitled to > immediately accept such offer; The sender of this e-mail (offer) excludes > any acceptance of the offer on the part of the recipient containing any > amendment or variation. > - the sender insists on that the respective contract is concluded only > upon an express mutual agreement on all its aspects. > - the sender of this e-mail informs that he/she is not authorized to enter > into any contracts on behalf of the company except for cases in which > he/she is expressly authorized to do so in writing, and such authorization > or power of attorney is submitted to the recipient or the person > represented by the recipient, or the existence of such authorization is > known to the recipient of the person represented by the recipient. >[[alternative HTML version deleted]]
Boris Steipe
2015-Mar-14 15:44 UTC
[R] Help with error: arguments imply differing number of rows
Not the same. Read carefully...
> $ edge : int [1:15, 1:2] 10 11 12 13 14 14 13 12 15 15 ...
> $ edge : int [1:15, 1:2] 10 11 12 13 14 15 15 14 16 16 ...
^^... etc
B.
On Mar 14, 2015, at 11:34 AM, Aman Gill <amango at gmail.com> wrote:
> Thanks for the reply. The results of str() are indeed the same. Is there
> anything else I can check that might explain the difference?
>
>> str(phyl_tree)
> List of 4
> $ edge : int [1:15, 1:2] 10 11 12 13 14 14 13 12 15 15 ...
> $ Nnode : int 7
> $ tip.label : chr [1:9] "Heliantheae" "Eupatorieae"
"Helenieae"
> "Gnaphalieae" ...
> $ edge.length: num [1:15] 1 1 1 1 1 1 2 1 2 1 ...
> - attr(*, "class")= chr "phylo"
> - attr(*, "order")= chr "cladewise"
>>
>> str(chem_tree)
> List of 4
> $ edge : int [1:15, 1:2] 10 11 12 13 14 15 15 14 16 16 ...
> $ Nnode : int 7
> $ tip.label : chr [1:9] "Heliantheae" "Helenieae"
"Eupatorieae"
> "Astereae" ...
> $ edge.length: num [1:15] 1 2 1 1 1 1 1 1 1 1 ...
> - attr(*, "class")= chr "phylo"
> - attr(*, "order")= chr "cladewise"
>
>> str(phyl_data)
> int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ...
> - attr(*, "dimnames")=List of 2
> ..$ : chr [1:35] "Uroleucon_aeneum"
"Uroleucon_aff_atripes"
> "Uroleucon_amamianum" "Uroleucon_ambrosiae" ...
> ..$ : chr [1:9] "Heliantheae" "Eupatorieae"
"Helenieae" "Gnaphalieae" ...
>>
>> str(chem_data)
> int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ...
> - attr(*, "dimnames")=List of 2
> ..$ : chr [1:35] "Uroleucon_aeneum"
"Uroleucon_aff_atripes"
> "Uroleucon_amamianum" "Uroleucon_ambrosiae" ...
> ..$ : chr [1:9] "Heliantheae" "Helenieae"
"Eupatorieae" "Astereae" ...
>
>
> On Fri, Mar 13, 2015 at 7:31 AM, PIKAL Petr <petr.pikal at
precheza.cz> wrote:
>
>> Hi
>>
>> Without further information you probably do not get answers. Everything
>> seems to be same so the only reason can be that the objects seems to be
>> same but they have some inner distinctions, maybe type of variables.
>>
>> Are results of
>>
>> str(your.objects)
>>
>> same in equivalent objects?
>>
>> Cheers
>> Petr
>>
>>> -----Original Message-----
>>> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
Aman
>>> Gill
>>> Sent: Thursday, March 12, 2015 6:08 PM
>>> To: r-help at r-project.org
>>> Subject: [R] Help with error: arguments imply differing number of
rows
>>>
>>> Hello,
>>>
>>> I am stuck trying to run an analysis using the package picante. I
am
>>> running two very similar analyses. One works as expected, but when
I
>>> try
>>> the other, I get the error:
>>>
>>> Error in data.frame(PD = PDs, SR = SR) :
>>> arguments imply differing number of rows: 34, 35
>>>
>>> This is strange to me since the data matrix is the same for both
>>> analyses
>>> (numbers of rows and columns are the same; the only difference is
the
>>> order
>>> of the columns). Each analyses requires a phylogenetic tree (.tre
>>> file),
>>> and each tree is very similar. Any thoughts as to what's
causing this
>>> problem? The problem may be specific to the function I'm using
[pd()],
>>> but
>>> since the error is a data.frame error I thought I'd ask here.
Here is
>>> the
>>> code I'm using:
>>>
>>> This works:
>>> phyl_tree <- read.nexus("phyl.tre")
>>> phyl_data <- as.matrix(read.table("phyl_matrix.txt"),
header=TRUE, sep
>>> >>> "\t")
>>> pd.result <- pd(phyl_data, phyl_tree, include.root = TRUE)
>>>
>>> This fails (this matrix.txt file is the same as above, except that
>>> columns
>>> are ordered to match the tree; I have also used the above
matrix.txt
>>> file)
>>> chem_tree <- read.nexus("chem.tre")
>>> chem_data <- as.matrix(read.table("chem_matrix.txt"),
header=TRUE, sep
>>> >>> "\t")
>>> pd_chem.result <- pd(chem_data, chem_tree, include.root = TRUE)
>>>
>>> ERROR:
>>> Error in data.frame(PD = PDs, SR = SR) :
>>> arguments imply differing number of rows: 34, 35
>>>
>>>
>>> To illustrate that the data for each run are very similar (row and
>>> column
>>> names are also the same in both data files):
>>>
>>>> phyl_tree
>>>
>>> Phylogenetic tree with 9 tips and 7 internal nodes.
>>>
>>> Tip labels:
>>> Heliantheae, Eupatorieae, Helenieae, Gnaphalieae, Anthemideae,
>>> Astereae, ...
>>> Node labels:
>>> root, minCyn, minCic, HelEurHel, HelEur, GnaAnthAst, ...
>>>
>>> Rooted; includes branch lengths.
>>>
>>>> nrow(phyl_data)
>>> [1] 35
>>>> ncol(phyl_data)
>>> [1] 9
>>>> class(phyl_data)
>>> [1] "matrix"
>>>
>>>
>>>> chem_tree
>>>
>>> Phylogenetic tree with 9 tips and 7 internal nodes.
>>>
>>> Tip labels:
>>> Heliantheae, Helenieae, Eupatorieae, Astereae, Gnaphlieae,
Senecioneae,
>>> ...
>>> Node labels:
>>> root, minC, minAnth, minSen, minGna, HelHel, ...
>>>
>>> Rooted; includes branch lengths.
>>>
>>>> nrow(chem_data)
>>> [1] 35
>>>> ncol(chem_data)
>>> [1] 9
>>>> class(chem_data)
>>> [1] "matrix"
>>>
>>> [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-
>>> guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>
>> ________________________________
>> Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou
>> ur?eny pouze jeho adres?t?m.
>> Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav?
>> neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho
kopie
>> vyma?te ze sv?ho syst?mu.
>> Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento
email
>> jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat.
>> Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou
modifikacemi
>> ?i zpo?d?n?m p?enosu e-mailu.
>>
>> V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?:
>> - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en?
>> smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu.
>> - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn?
p?ijmout;
>> Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany
>> p??jemce s dodatkem ?i odchylkou.
>> - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve
>> v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech.
>> - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za
>> spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn?
zmocn?n
>> nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi
tohoto
>> emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich
>> existence je adres?tovi ?i osob? j?m zastoupen? zn?m?.
>>
>> This e-mail and any documents attached to it may be confidential and
are
>> intended only for its intended recipients.
>> If you received this e-mail by mistake, please immediately inform its
>> sender. Delete the contents of this e-mail with all attachments and its
>> copies from your system.
>> If you are not the intended recipient of this e-mail, you are not
>> authorized to use, disseminate, copy or disclose this e-mail in any
manner.
>> The sender of this e-mail shall not be liable for any possible damage
>> caused by modifications of the e-mail or by delay with transfer of the
>> email.
>>
>> In case that this e-mail forms part of business dealings:
>> - the sender reserves the right to end negotiations about entering into
a
>> contract in any time, for any reason, and without stating any
reasoning.
>> - if the e-mail contains an offer, the recipient is entitled to
>> immediately accept such offer; The sender of this e-mail (offer)
excludes
>> any acceptance of the offer on the part of the recipient containing any
>> amendment or variation.
>> - the sender insists on that the respective contract is concluded only
>> upon an express mutual agreement on all its aspects.
>> - the sender of this e-mail informs that he/she is not authorized to
enter
>> into any contracts on behalf of the company except for cases in which
>> he/she is expressly authorized to do so in writing, and such
authorization
>> or power of attorney is submitted to the recipient or the person
>> represented by the recipient, or the existence of such authorization is
>> known to the recipient of the person represented by the recipient.
>>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
Aman Gill
2015-Mar-18 20:47 UTC
[R] Help with error: arguments imply differing number of rows
I did notice those differences, but I presumed they reflected different values in each of the two objects, rather than a difference in the structure of the objects, which I assume to be the cause of the error. For example, the "tip.label" structure for each object is the same [1:9] although each has different values (plant tribe names). Would you mind explaining how these differences might pertain to the error of "arguments imply differing number of rows"? I am not a very experienced R user so I may be missing something here. On Sat, Mar 14, 2015 at 11:44 AM, Boris Steipe <boris.steipe at utoronto.ca> wrote:> Not the same. Read carefully... > > > $ edge : int [1:15, 1:2] 10 11 12 13 14 14 13 12 15 15 ... > > $ edge : int [1:15, 1:2] 10 11 12 13 14 15 15 14 16 16 ... > ^^... etc > > B. > > > On Mar 14, 2015, at 11:34 AM, Aman Gill <amango at gmail.com> wrote: > > > Thanks for the reply. The results of str() are indeed the same. Is there > > anything else I can check that might explain the difference? > > > >> str(phyl_tree) > > List of 4 > > $ edge : int [1:15, 1:2] 10 11 12 13 14 14 13 12 15 15 ... > > $ Nnode : int 7 > > $ tip.label : chr [1:9] "Heliantheae" "Eupatorieae" "Helenieae" > > "Gnaphalieae" ... > > $ edge.length: num [1:15] 1 1 1 1 1 1 2 1 2 1 ... > > - attr(*, "class")= chr "phylo" > > - attr(*, "order")= chr "cladewise" > >> > >> str(chem_tree) > > List of 4 > > $ edge : int [1:15, 1:2] 10 11 12 13 14 15 15 14 16 16 ... > > $ Nnode : int 7 > > $ tip.label : chr [1:9] "Heliantheae" "Helenieae" "Eupatorieae" > > "Astereae" ... > > $ edge.length: num [1:15] 1 2 1 1 1 1 1 1 1 1 ... > > - attr(*, "class")= chr "phylo" > > - attr(*, "order")= chr "cladewise" > > > >> str(phyl_data) > > int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ... > > - attr(*, "dimnames")=List of 2 > > ..$ : chr [1:35] "Uroleucon_aeneum" "Uroleucon_aff_atripes" > > "Uroleucon_amamianum" "Uroleucon_ambrosiae" ... > > ..$ : chr [1:9] "Heliantheae" "Eupatorieae" "Helenieae" "Gnaphalieae" > ... > >> > >> str(chem_data) > > int [1:35, 1:9] 0 0 0 1 0 0 0 0 0 1 ... > > - attr(*, "dimnames")=List of 2 > > ..$ : chr [1:35] "Uroleucon_aeneum" "Uroleucon_aff_atripes" > > "Uroleucon_amamianum" "Uroleucon_ambrosiae" ... > > ..$ : chr [1:9] "Heliantheae" "Helenieae" "Eupatorieae" "Astereae" ... > > > > > > On Fri, Mar 13, 2015 at 7:31 AM, PIKAL Petr <petr.pikal at precheza.cz> > wrote: > > > >> Hi > >> > >> Without further information you probably do not get answers. Everything > >> seems to be same so the only reason can be that the objects seems to be > >> same but they have some inner distinctions, maybe type of variables. > >> > >> Are results of > >> > >> str(your.objects) > >> > >> same in equivalent objects? > >> > >> Cheers > >> Petr > >> > >>> -----Original Message----- > >>> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Aman > >>> Gill > >>> Sent: Thursday, March 12, 2015 6:08 PM > >>> To: r-help at r-project.org > >>> Subject: [R] Help with error: arguments imply differing number of rows > >>> > >>> Hello, > >>> > >>> I am stuck trying to run an analysis using the package picante. I am > >>> running two very similar analyses. One works as expected, but when I > >>> try > >>> the other, I get the error: > >>> > >>> Error in data.frame(PD = PDs, SR = SR) : > >>> arguments imply differing number of rows: 34, 35 > >>> > >>> This is strange to me since the data matrix is the same for both > >>> analyses > >>> (numbers of rows and columns are the same; the only difference is the > >>> order > >>> of the columns). Each analyses requires a phylogenetic tree (.tre > >>> file), > >>> and each tree is very similar. Any thoughts as to what's causing this > >>> problem? The problem may be specific to the function I'm using [pd()], > >>> but > >>> since the error is a data.frame error I thought I'd ask here. Here is > >>> the > >>> code I'm using: > >>> > >>> This works: > >>> phyl_tree <- read.nexus("phyl.tre") > >>> phyl_data <- as.matrix(read.table("phyl_matrix.txt"), header=TRUE, sep > >>> > >>> "\t") > >>> pd.result <- pd(phyl_data, phyl_tree, include.root = TRUE) > >>> > >>> This fails (this matrix.txt file is the same as above, except that > >>> columns > >>> are ordered to match the tree; I have also used the above matrix.txt > >>> file) > >>> chem_tree <- read.nexus("chem.tre") > >>> chem_data <- as.matrix(read.table("chem_matrix.txt"), header=TRUE, sep > >>> > >>> "\t") > >>> pd_chem.result <- pd(chem_data, chem_tree, include.root = TRUE) > >>> > >>> ERROR: > >>> Error in data.frame(PD = PDs, SR = SR) : > >>> arguments imply differing number of rows: 34, 35 > >>> > >>> > >>> To illustrate that the data for each run are very similar (row and > >>> column > >>> names are also the same in both data files): > >>> > >>>> phyl_tree > >>> > >>> Phylogenetic tree with 9 tips and 7 internal nodes. > >>> > >>> Tip labels: > >>> Heliantheae, Eupatorieae, Helenieae, Gnaphalieae, Anthemideae, > >>> Astereae, ... > >>> Node labels: > >>> root, minCyn, minCic, HelEurHel, HelEur, GnaAnthAst, ... > >>> > >>> Rooted; includes branch lengths. > >>> > >>>> nrow(phyl_data) > >>> [1] 35 > >>>> ncol(phyl_data) > >>> [1] 9 > >>>> class(phyl_data) > >>> [1] "matrix" > >>> > >>> > >>>> chem_tree > >>> > >>> Phylogenetic tree with 9 tips and 7 internal nodes. > >>> > >>> Tip labels: > >>> Heliantheae, Helenieae, Eupatorieae, Astereae, Gnaphlieae, Senecioneae, > >>> ... > >>> Node labels: > >>> root, minC, minAnth, minSen, minGna, HelHel, ... > >>> > >>> Rooted; includes branch lengths. > >>> > >>>> nrow(chem_data) > >>> [1] 35 > >>>> ncol(chem_data) > >>> [1] 9 > >>>> class(chem_data) > >>> [1] "matrix" > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> ______________________________________________ > >>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >>> https://stat.ethz.ch/mailman/listinfo/r-help > >>> PLEASE do read the posting guide http://www.R-project.org/posting- > >>> guide.html > >>> and provide commented, minimal, self-contained, reproducible code. > >> > >> ________________________________ > >> Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou > >> ur?eny pouze jeho adres?t?m. > >> Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? > >> neprodlen? jeho odes?latele. 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