thr3ads.net - R help - [R] library(Rcmdr) sh: otool: command not found [Feb 2015]

If this information is useful, please help other people find it:
Share via:

varin sacha

2015-Feb-10 23:16 UTC

[R] library(Rcmdr) sh: otool: command not found

Hi R experts,

I have just updated R and RStudio. I am running OS X 10.6.8

R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin10.8.0 (64-bit)


RStudio Version 0.98.1102 ? ? 2009-2014 RStudio, Inc.
Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.59.10 (KHTML,
like Gecko)


Everything is ok for installing the Rcmdr package.

install.packages("Rcmdr")
Installing package into ?/Users/Caro/Library/R/3.1/library?
(as ?lib? is unspecified)
essai de l'URL
'http://cran.rstudio.com/bin/macosx/contrib/3.1/Rcmdr_2.1-6.tgz'
Content type 'application/x-gzip' length 5340999 bytes (5.1 Mb)
URL ouverte
=================================================downloaded 5.1 Mb


The downloaded binary packages are in
/var/folders/V2/V26Pbtc-GsSUTVPWEj6Bdk+++TI/-Tmp-//RtmpgNlyXf/downloaded_packages> 

But once I write library(Rcmdr), it doesn't work.

library(Rcmdr)
Le chargement a n?cessit? le package : splines
Le chargement a n?cessit? le package : RcmdrMisc
Le chargement a n?cessit? le package : car
Le chargement a n?cessit? le package : sandwich
Error : .onLoad a ?chou? dans loadNamespace() pour 'tcltk', d?tails :
appel : system2("otool", c("-L", shQuote(DLL)), stdout =
TRUE)
erreur : erreur lors de l'ex?cution d'une commande
Erreur : le chargement du package ou de l'espace de noms a ?chou? pour
?Rcmdr?
sh: otool: command not found

Has somebody any idea of how I can solve this problem ?

Thanks,

Nordlund, Dan (DSHS/RDA)

2015-Feb-10 23:32 UTC

head link

[R] library(Rcmdr) sh: otool: command not found

Try setting dependencies = TRUE in install.packages()

install.packages("Rcmdr", dependencies = TRUE)


hope this is helpful,

Dan

Daniel J. Nordlund, PhD
Research and Data Analysis Division
Services & Enterprise Support Administration
Washington State Department of Social and Health Services

> -----Original Message-----
> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of varin
> sacha
> Sent: Tuesday, February 10, 2015 3:17 PM
> To: r-help at R-project.org
> Subject: [R] library(Rcmdr) sh: otool: command not found
> 
> Hi R experts,
> 
> I have just updated R and RStudio. I am running OS X 10.6.8
> 
> R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
> Copyright (C) 2014 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> 
> RStudio Version 0.98.1102 ? ? 2009-2014 RStudio, Inc.
> Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.59.10
> (KHTML, like Gecko)
> 
> 
> Everything is ok for installing the Rcmdr package.
> 
> install.packages("Rcmdr")
> Installing package into ?/Users/Caro/Library/R/3.1/library?
> (as ?lib? is unspecified)
> essai de l'URL
> 'http://cran.rstudio.com/bin/macosx/contrib/3.1/Rcmdr_2.1-6.tgz'
> Content type 'application/x-gzip' length 5340999 bytes (5.1 Mb)
> URL ouverte
> =================================================> downloaded 5.1 Mb
> 
> 
> The downloaded binary packages are in
> /var/folders/V2/V26Pbtc-GsSUTVPWEj6Bdk+++TI/-Tmp-
> //RtmpgNlyXf/downloaded_packages
> >
> 
> 
> But once I write library(Rcmdr), it doesn't work.
> 
> library(Rcmdr)
> Le chargement a n?cessit? le package : splines
> Le chargement a n?cessit? le package : RcmdrMisc
> Le chargement a n?cessit? le package : car
> Le chargement a n?cessit? le package : sandwich
> Error : .onLoad a ?chou? dans loadNamespace() pour 'tcltk', d?tails
:
> appel : system2("otool", c("-L", shQuote(DLL)), stdout
= TRUE)
> erreur : erreur lors de l'ex?cution d'une commande
> Erreur : le chargement du package ou de l'espace de noms a ?chou? pour
> ?Rcmdr?
> sh: otool: command not found
> 
> Has somebody any idea of how I can solve this problem ?
> 
> Thanks,
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.

John Fox

2015-Feb-11 02:12 UTC

head link

[R] library(Rcmdr) sh: otool: command not found

Dear varin sacha,

This problem presumably will also arise if you try to load the tcltk package
directly via library(tcltk) and has been discussed before on the R-SIG-Mac email
list, for example at
<https://stat.ethz.ch/pipermail/r-sig-mac/2014-December/011260.html>. The
problem is fixed in the patched version of R 3.1.2 for Mac OS X, available at
<http://r.research.att.com/>.

I hope this helps,
 John

-------------------------------------------------------
John Fox, Professor
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox/


> -----Original Message-----
> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of varin
sacha
> Sent: February-10-15 6:17 PM
> To: r-help at R-project.org
> Subject: [R] library(Rcmdr) sh: otool: command not found
> 
> Hi R experts,
> 
> I have just updated R and RStudio. I am running OS X 10.6.8
> 
> R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
> Copyright (C) 2014 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> 
> RStudio Version 0.98.1102 ? ? 2009-2014 RStudio, Inc.
> Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.59.10
> (KHTML, like Gecko)
> 
> 
> Everything is ok for installing the Rcmdr package.
> 
> install.packages("Rcmdr")
> Installing package into ?/Users/Caro/Library/R/3.1/library?
> (as ?lib? is unspecified)
> essai de l'URL
'http://cran.rstudio.com/bin/macosx/contrib/3.1/Rcmdr_2.1-
> 6.tgz'
> Content type 'application/x-gzip' length 5340999 bytes (5.1 Mb) URL
ouverte
> =================================================> downloaded 5.1 Mb
> 
> 
> The downloaded binary packages are in
> /var/folders/V2/V26Pbtc-GsSUTVPWEj6Bdk+++TI/-Tmp-
> //RtmpgNlyXf/downloaded_packages
> >
> 
> 
> But once I write library(Rcmdr), it doesn't work.
> 
> library(Rcmdr)
> Le chargement a n?cessit? le package : splines Le chargement a n?cessit? le
> package : RcmdrMisc Le chargement a n?cessit? le package : car Le
> chargement a n?cessit? le package : sandwich Error : .onLoad a ?chou? dans
> loadNamespace() pour 'tcltk', d?tails :
> appel : system2("otool", c("-L", shQuote(DLL)), stdout
= TRUE) erreur : erreur
> lors de l'ex?cution d'une commande Erreur : le chargement du
package ou de
> l'espace de noms a ?chou? pour ?Rcmdr?
> sh: otool: command not found
> 
> Has somebody any idea of how I can solve this problem ?
> 
> Thanks,
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.

---
This email has been checked for viruses by Avast antivirus software.
http://www.avast.com

varin sacha

2015-Feb-11 14:55 UTC

head link

[R] library(Rcmdr) sh: otool: command not found

Dear John,
Dear Dan,

Many thanks for your response. It works perfectly.

Best,


----- Mail original -----
De : John Fox <jfox at mcmaster.ca>
? : 'varin sacha' <varinsacha at yahoo.fr>
Cc : "'r-help at R-project.org'" <r-help at
r-project.org>
Envoy? le : Mercredi 11 f?vrier 2015 3h12
Objet : RE: [R] library(Rcmdr) sh: otool: command not found

Dear varin sacha,

This problem presumably will also arise if you try to load the tcltk package
directly via library(tcltk) and has been discussed before on the R-SIG-Mac email
list, for example at
<https://stat.ethz.ch/pipermail/r-sig-mac/2014-December/011260.html>. The
problem is fixed in the patched version of R 3.1.2 for Mac OS X, available at
<http://r.research.att.com/>.

I hope this helps,
John

-------------------------------------------------------
John Fox, Professor
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox/



> -----Original Message-----
> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of varin
sacha
> Sent: February-10-15 6:17 PM
> To: r-help at R-project.org
> Subject: [R] library(Rcmdr) sh: otool: command not found
>
> Hi R experts,
>
> I have just updated R and RStudio. I am running OS X 10.6.8
>
> R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
> Copyright (C) 2014 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
>
> RStudio Version 0.98.1102 ? ? 2009-2014 RStudio, Inc.
> Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.59.10
> (KHTML, like Gecko)
>
>
> Everything is ok for installing the Rcmdr package.
>
> install.packages("Rcmdr")
> Installing package into ?/Users/Caro/Library/R/3.1/library?
> (as ?lib? is unspecified)
> essai de l'URL
'http://cran.rstudio.com/bin/macosx/contrib/3.1/Rcmdr_2.1-
> 6.tgz'
> Content type 'application/x-gzip' length 5340999 bytes (5.1 Mb) URL
ouverte
> =================================================> downloaded 5.1 Mb
>
>
> The downloaded binary packages are in
> /var/folders/V2/V26Pbtc-GsSUTVPWEj6Bdk+++TI/-Tmp-
> //RtmpgNlyXf/downloaded_packages
> >
>
>
> But once I write library(Rcmdr), it doesn't work.
>
> library(Rcmdr)
> Le chargement a n?cessit? le package : splines Le chargement a n?cessit? le
> package : RcmdrMisc Le chargement a n?cessit? le package : car Le
> chargement a n?cessit? le package : sandwich Error : .onLoad a ?chou? dans
> loadNamespace() pour 'tcltk', d?tails :
> appel : system2("otool", c("-L", shQuote(DLL)), stdout
= TRUE) erreur : erreur
> lors de l'ex?cution d'une commande Erreur : le chargement du
package ou de
> l'espace de noms a ?chou? pour ?Rcmdr?
> sh: otool: command not found
>
> Has somebody any idea of how I can solve this problem ?
>
> Thanks,
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.

---
This email has been checked for viruses by Avast antivirus software.
http://www.avast.com

R help - Feb 2015 - library(Rcmdr) sh: otool: command not found

[R] library(Rcmdr) sh: otool: command not found

[R] library(Rcmdr) sh: otool: command not found

[R] library(Rcmdr) sh: otool: command not found

[R] library(Rcmdr) sh: otool: command not found