Michael Chirico
2024-Jan-26 17:36 UTC
[Rd] readChar() could read the whole file by default?
I am curious why readLines() has a default (n=-1L) to read the full file while readChar() has no default for nchars= (i.e., readChar(file) is an error). Is there a technical reason for this? I often[1] see code like paste(readLines(f), collapse="\n") which would be better served by readChar(), especially given issues with the global string cache I've come across[2]. But lacking the default, the replacement might come across less clean. For my own purposes the incantation readChar(file, file.size(file)) is ubiquitous. Taking CRAN code[3] as a sample[4], 41% of readChar() calls use either readChar(f, file.info(f)$size) or readChar(f, file.size(f))[5]. Thanks for the consideration and feedback, Mike C [1] e.g. a quick search shows O(100) usages in CRAN packages: https://github.com/search?q=org%3Acran+%2Fpaste%5B%28%5D%5Cs*readLines%5B%28%5D.*%5B%29%5D%2C%5Cs*collapse%5Cs*%3D%5Cs*%5B%27%22%5D%5B%5C%5C%5D%2F+lang%3AR&type=code, and O(1000) usages generally on GitHub: https://github.com/search?q=lang%3AR+%2Fpaste%5B%28%5D%5Cs*readLines%5B%28%5D.*%5B%29%5D%2C%5Cs*collapse%5Cs*%3D%5Cs*%5B%27%22%5D%5B%5C%5C%5D%2F+lang%3AR&type=code [2] AIUI the readLines() approach "pollutes" the global string cache with potentially 1000s/10000s of strings for each line, only to get them gc()'d after combining everything with paste(collapse="\n") [3] The mirror on GitHub, which includes archived packages as well as current (well, eventually-consistent) versions. [4] Note that usage in packages is likely not representative of usage in scripts, e.g. I often saw readChar(f, 1), or eol-finders like readChar(f, 500) + grep("[\n\r]"), which makes more sense to me as something to find in package internals than in analysis scripts. FWIW I searched an internal codebase (scripts and packages) and found 70% of usages reading the full file. [5] repro: https://gist.github.com/MichaelChirico/247ea9500460dca239f031e74bdcf76b requires GitHub PAT in env GITHUB_PAT for API permissions.
iuke-tier@ey m@iii@g oii uiow@@edu
2024-Jan-26 21:05 UTC
[Rd] [External] readChar() could read the whole file by default?
On Fri, 26 Jan 2024, Michael Chirico wrote:> I am curious why readLines() has a default (n=-1L) to read the full > file while readChar() has no default for nchars= (i.e., readChar(file) > is an error). Is there a technical reason for this? > > I often[1] see code like paste(readLines(f), collapse="\n") which > would be better served by readChar(), especially given issues with the > global string cache I've come across[2]. But lacking the default, the > replacement might come across less clean.The string cache seems like a very dark pink herring to me. The fact that the lines are allocated on the heap might create an issue; the cache isn't likely to add much to that. In any case I would need to see a realistic example to convince me this is worth addressing on performance grounds. I don't see any reason in principle not to have readChar and readBin read the entire file if n = -1 (others might) but someone would need to write a patch to implement that. Best, luke> For my own purposes the incantation readChar(file, file.size(file)) is > ubiquitous. Taking CRAN code[3] as a sample[4], 41% of readChar() > calls use either readChar(f, file.info(f)$size) or readChar(f, > file.size(f))[5]. > > Thanks for the consideration and feedback, > Mike C > > [1] e.g. a quick search shows O(100) usages in CRAN packages: > https://github.com/search?q=org%3Acran+%2Fpaste%5B%28%5D%5Cs*readLines%5B%28%5D.*%5B%29%5D%2C%5Cs*collapse%5Cs*%3D%5Cs*%5B%27%22%5D%5B%5C%5C%5D%2F+lang%3AR&type=code, > and O(1000) usages generally on GitHub: > https://github.com/search?q=lang%3AR+%2Fpaste%5B%28%5D%5Cs*readLines%5B%28%5D.*%5B%29%5D%2C%5Cs*collapse%5Cs*%3D%5Cs*%5B%27%22%5D%5B%5C%5C%5D%2F+lang%3AR&type=code > [2] AIUI the readLines() approach "pollutes" the global string cache > with potentially 1000s/10000s of strings for each line, only to get > them gc()'d after combining everything with paste(collapse="\n") > [3] The mirror on GitHub, which includes archived packages as well as > current (well, eventually-consistent) versions. > [4] Note that usage in packages is likely not representative of usage > in scripts, e.g. I often saw readChar(f, 1), or eol-finders like > readChar(f, 500) + grep("[\n\r]"), which makes more sense to me as > something to find in package internals than in analysis scripts. FWIW > I searched an internal codebase (scripts and packages) and found 70% > of usages reading the full file. > [5] repro: https://gist.github.com/MichaelChirico/247ea9500460dca239f031e74bdcf76b > requires GitHub PAT in env GITHUB_PAT for API permissions. > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel >-- Luke Tierney Ralph E. Wareham Professor of Mathematical Sciences University of Iowa Phone: 319-335-3386 Department of Statistics and Fax: 319-335-3017 Actuarial Science 241 Schaeffer Hall email: luke-tierney at uiowa.edu Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu