R devel - Jun 2014 - rJava Java debugger API

Hi,
     I use rJava and call Java code that uses JVMTI code like this

      VM vm = VM.getVM();
       Universe universe = vm.getUniverse();
        CollectedHeap heap = universe.heap();

This code attaches to another JVM and to get its internals. This is legal
Java and it works. But when I use rJava to call this code, the call is
successfull and it throws an error. I believe there  is Java native
Interface involved in the JVM and it seems to affect R. rJava is 0.9
> version
               _                           
platform       x86_64-apple-darwin10.8.0   
arch           x86_64                      
os             darwin10.8.0                
system         x86_64, darwin10.8.0        
status                                     
major          3                           
minor          1.0                         
year           2014                        
month          04                          
day            10                          
svn rev        65387                       
language       R                           
version.string R version 3.1.0 (2014-04-10)
nickname       Spring Dance                


Thanks,
Mohan

Error: C stack usage  140730070087404 is too close to the limit
Error: C stack usage  140730070156700 is too close to the
limit
> Warning: stack imbalance in '.Call', 59 then -1
Warning: stack imbalance in '{', 56 then -4

 *** caught bus error ***
address 0x100583fd8, cause 'non-existent physical address'


 *** caught bus error ***
address 0x100583fd8, cause 'non-existent physical
address'
> 
Traceback:
 1: run(timeoutMs)
 2: service(timeout)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: run(10)


 *** caught segfault ***
address 0x20057ea40, cause 'memory not mapped'

Traceback:
 1: run(timeoutMs)
 2: service(timeout)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace



--
View this message in context:
http://r.789695.n4.nabble.com/rJava-Java-debugger-API-tp4692222.html
Sent from the R devel mailing list archive at Nabble.com.

*Now* you tell us rJava is involved.  Its lists are accessed via 
http://www.rforge.net/rJava/

On 17/06/2014 07:43, rmohan wrote:
> Hi,
>       I use rJava and call Java code that uses JVMTI code like this
>
>        VM vm = VM.getVM();
>         Universe universe = vm.getUniverse();
>          CollectedHeap heap = universe.heap();
>
> This code attaches to another JVM and to get its internals. This is legal
> Java and it works. But when I use rJava to call this code, the call is
> successfull and it throws an error. I believe there  is Java native
> Interface involved in the JVM and it seems to affect R. rJava is 0.9
>
>> version
>                 _
> platform       x86_64-apple-darwin10.8.0
> arch           x86_64
> os             darwin10.8.0
> system         x86_64, darwin10.8.0
> status
> major          3
> minor          1.0
> year           2014
> month          04
> day            10
> svn rev        65387
> language       R
> version.string R version 3.1.0 (2014-04-10)
> nickname       Spring Dance
>
>
> Thanks,
> Mohan
>
> Error: C stack usage  140730070087404 is too close to the limit
> Error: C stack usage  140730070156700 is too close to the limit
>> Warning: stack imbalance in '.Call', 59 then -1
> Warning: stack imbalance in '{', 56 then -4
>
>   *** caught bus error ***
> address 0x100583fd8, cause 'non-existent physical address'
>
>
>   *** caught bus error ***
> address 0x100583fd8, cause 'non-existent physical address'
>>
> Traceback:
>   1: run(timeoutMs)
>   2: service(timeout)
>
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: run(10)
>
>
>   *** caught segfault ***
> address 0x20057ea40, cause 'memory not mapped'
>
> Traceback:
>   1: run(timeoutMs)
>   2: service(timeout)
>
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
>
>
>
> --
> View this message in context:
http://r.789695.n4.nabble.com/rJava-Java-debugger-API-tp4692222.html
> Sent from the R devel mailing list archive at Nabble.com.
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595