Hello R Developers,
This is my first foray into using c-code with R, so please forgive my
foolishness.
I had a look at the archives and did not find anything on this, so
hopefully I am not doubling up.
I have tried to use R cmd to create an object file from the odesolve
dynload example.
I am using windows and have just installed rtools, and have the latest
version of stable R (2..7.2).
This is what happened:
C:\Program Files\R\R-2.7.2\library\odesolve\dynload\c>Rcmd SHLIB mymod.c
making mymod.d from mymod.c
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I
C:/PROGRA~1/R/R-27~1.2/include -i mymod_res.rc -o mymod_res.o
gcc -std=gnu99 -shared -s -o mymod.dll mymod.def mymod.o mymod_res.o
-LC:/PROGRA~1/R/R-27~1.2/bin -lR
Cannot export myderivs: symbol not found
Cannot export myjac: symbol not found
Cannot export mymod: symbol not found
mymod.o: In function `mymod':
/home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c
/mymod.c:14: undefined reference to `GLOBAL_OFFSET_TA
BLE_'
mymod.o: In function `myderivs':
/home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c
/mymod.c:21: undefined reference to `GLOBAL_OFFSET_TA
BLE_'
mymod.o: In function `myjac':
/home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c
/mymod.c:30: undefined reference to `GLOBAL_OFFSET_TA
BLE_'
collect2: ld returned 1 exit status
make: *** [mymod.dll] Error 1
Any ideas what I have not got set up properly? What do I need to do to
get this firing?
Advice appreciated.
Kind regards,
Matt Redding
********************************DISCLAIMER**************...{{dropped:15}}
Redding, Matthew wrote:> Hello R Developers, > > This is my first foray into using c-code with R, so please forgive my > foolishness. > I had a look at the archives and did not find anything on this, so > hopefully I am not doubling up. > > I have tried to use R cmd to create an object file from the odesolve > dynload example. > I am using windows and have just installed rtools, and have the latest > version of stable R (2..7.2). > > This is what happened: > > C:\Program Files\R\R-2.7.2\library\odesolve\dynload\c>Rcmd SHLIB mymod.c > making mymod.d from mymod.c > windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I > C:/PROGRA~1/R/R-27~1.2/include -i mymod_res.rc -o mymod_res.o > gcc -std=gnu99 -shared -s -o mymod.dll mymod.def mymod.o mymod_res.o > -LC:/PROGRA~1/R/R-27~1.2/bin -lR > Cannot export myderivs: symbol not found > Cannot export myjac: symbol not found > Cannot export mymod: symbol not found > mymod.o: In function `mymod': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:14: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > mymod.o: In function `myderivs': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:21: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > mymod.o: In function `myjac': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:30: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > collect2: ld returned 1 exit status > make: *** [mymod.dll] Error 1 > > Any ideas what I have not got set up properly? What do I need to do to > get this firing? > Advice appreciated. >I'm a bit rusty on the windows tools, but it looks like mymod.o and mymod_res.rc not being made above. Any chance that you have old versions lying around? -- O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
Hi Matthew, thank you for the bug report, Woodrow Setzer just uploaded a minor bugfix and I assume he informed you off-list. One additional note for the records: We suggest odesolve users should switch over to the new deSolve package. It is maintained by the the same (and two additional) authors like odesolve. It is almost ;-) fully compatible to odesolve and will replace it completely. The authors renamed it to deSolve, because it's able to solve also DAE and PDE systems, not only ODEs, so the name odesolve was too narrow and is now deprecated. Note that deSolve has a package vignette about writing models in compiled code. Thomas Petzoldt Redding, Matthew wrote:> Hello R Developers, > > This is my first foray into using c-code with R, so please forgive my > foolishness. > I had a look at the archives and did not find anything on this, so > hopefully I am not doubling up. > > I have tried to use R cmd to create an object file from the odesolve > dynload example. > I am using windows and have just installed rtools, and have the latest > version of stable R (2..7.2). > > This is what happened: > > C:\Program Files\R\R-2.7.2\library\odesolve\dynload\c>Rcmd SHLIB mymod.c > making mymod.d from mymod.c > windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I > C:/PROGRA~1/R/R-27~1.2/include -i mymod_res.rc -o mymod_res.o > gcc -std=gnu99 -shared -s -o mymod.dll mymod.def mymod.o mymod_res.o > -LC:/PROGRA~1/R/R-27~1.2/bin -lR > Cannot export myderivs: symbol not found > Cannot export myjac: symbol not found > Cannot export mymod: symbol not found > mymod.o: In function `mymod': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:14: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > mymod.o: In function `myderivs': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:21: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > mymod.o: In function `myjac': > /home/setzer/tasks/Programming_Projects/odesolve/odesolve/inst/dynload/c > /mymod.c:30: undefined reference to `GLOBAL_OFFSET_TA > BLE_' > collect2: ld returned 1 exit status > make: *** [mymod.dll] Error 1 > > Any ideas what I have not got set up properly? What do I need to do to > get this firing? > Advice appreciated. > > Kind regards, > > Matt Redding > ********************************DISCLAIMER**************...{{dropped:15}} > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel >-- Thomas Petzoldt Technische Universitaet Dresden Institut fuer Hydrobiologie thomas.petzoldt at tu-dresden.de 01062 Dresden http://tu-dresden.de/hydrobiologie/ GERMANY