Hi,
I experienced a problem with the package Geneland under R 2.6.0
with windows XP professional.
The commands below should simulate a dataset,
then make an MCMC simulation stored in tempdir().
It works with R 2.5.1 (both GUI and command line)
It works with the command line of R 2.6.0
but not with the R GUI of 2.6.0: no output file is created in tempdir()
and R remains frozen.
I reported it as a bug
(PR#9964) but did not get any feed back.
Thanks in advance for any help.
Gilles
set.seed(1)
data <- simdata(nindiv=200,
coord.lim=c(0,1,0,1) ,
number.nuclei=5 ,
allele.numbers=rep(10,20),
IBD=FALSE,
npop=2,
give.tess.grid=FALSE)
path.mcmc <- paste(tempdir(),"/",sep="")
mcmcFmodel(coordinates= t(data$coord.indiv),
genotypes=data$genotypes,
path.mcmc=path.mcmc,
rate.max=10,
delta.coord=0,
npopmin=1,
npopinit=5,
npopmax=5,
nb.nuclei.max=50,
nit=500,
thinning=1,
freq.model="Dirichlet",
varnpop=FALSE,
spatial=TRUE)
Gilles GUILLOT wrote:> Hi, > I experienced a problem with the package Geneland under R 2.6.0 > with windows XP professional. > > The commands below should simulate a dataset, > then make an MCMC simulation stored in tempdir(). > > It works with R 2.5.1 (both GUI and command line) > It works with the command line of R 2.6.0 > but not with the R GUI of 2.6.0: no output file is created in tempdir() > and R remains frozen. > I reported it as a bug > (PR#9964) but did not get any feed back.I think the general rule-of-thumb is to contact the package author for problems with individual packages. Many package authors read this list, but there are probably some that do not. Sometimes problems with individual packages are actually bugs in R, but I would say that this is not usually the case. However, the package author is probably the best person to make this judgment. Sean