hpages at fhcrc.org
2007-Feb-05 17:07 UTC
[Rd] Wrong vector size reported by error message
Hi, On my system, I get the following error message: > big <- 2:(2**30) Error: cannot allocate vector of size 0 Kb Note the wrong "size 0 Kb" in the message! Cheers, H.> sessionInfo()R version 2.5.0 Under development (unstable) (2007-01-05 r40386) i686-pc-linux-gnu locale: LC_CTYPE=en_CA.UTF-8;LC_NUMERIC=C;LC_TIME=en_CA.UTF-8;LC_COLLATE=en_CA.UTF-8;LC_MONETARY=en_CA.UTF-8;LC_MESSAGES=en_CA.UTF-8;LC_PAPER=en_CA.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" [7] "base"
my R-SVN revision is 40458 compared to 40386 yours, could it be corrected already? * ~: R > 2**30 [1] 1073741824 > a<-2:1073741824 Error: cannot allocate vector of size 4194304 Kb > sessionInfo() R version 2.5.0 Under development (unstable) (2007-01-22 r40548) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" [7] "base" > -- Dr Oleg Sklyar | EBI-EMBL, Cambridge CB10 1SD, UK | +44-1223-494466 hpages at fhcrc.org wrote:> Hi, > > On my system, I get the following error message: > > > big <- 2:(2**30) > Error: cannot allocate vector of size 0 Kb > > Note the wrong "size 0 Kb" in the message! > > Cheers, > H. > > >> sessionInfo() > R version 2.5.0 Under development (unstable) (2007-01-05 r40386) > i686-pc-linux-gnu > > locale: > LC_CTYPE=en_CA.UTF-8;LC_NUMERIC=C;LC_TIME=en_CA.UTF-8;LC_COLLATE=en_CA.UTF-8;LC_MONETARY=en_CA.UTF-8;LC_MESSAGES=en_CA.UTF-8;LC_PAPER=en_CA.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" > [7] "base" > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel
Oleg Sklyar wrote:> my R-SVN revision is 40458 compared to 40386 yours, could it be > corrected already? > > * ~: R > > 2**30 > [1] 1073741824 > > a<-2:1073741824 > Error: cannot allocate vector of size 4194304 Kb >There could be system dependencies. I get> a<-2:1073741824> a<-2:(2**30)> gc()used (Mb) gc trigger (Mb) max used (Mb) Ncells 235404 12.6 467875 25.0 350000 18.7 Vcells 536991796 4097.0 1127800953 8604.5 1073863120 8193.0>;-) (Frankly, I had forgotten about the size of that swap partition...) -pd> > sessionInfo() > R version 2.5.0 Under development (unstable) (2007-01-22 r40548) > x86_64-unknown-linux-gnu > > locale: > LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" > [7] "base" > > > > -- > Dr Oleg Sklyar | EBI-EMBL, Cambridge CB10 1SD, UK | +44-1223-494466 > > > hpages at fhcrc.org wrote: > >> Hi, >> >> On my system, I get the following error message: >> >> > big <- 2:(2**30) >> Error: cannot allocate vector of size 0 Kb >> >> Note the wrong "size 0 Kb" in the message! >> >> Cheers, >> H. >> >> >> >>> sessionInfo() >>> >> R version 2.5.0 Under development (unstable) (2007-01-05 r40386) >> i686-pc-linux-gnu >> >> locale: >> LC_CTYPE=en_CA.UTF-8;LC_NUMERIC=C;LC_TIME=en_CA.UTF-8;LC_COLLATE=en_CA.UTF-8;LC_MONETARY=en_CA.UTF-8;LC_MESSAGES=en_CA.UTF-8;LC_PAPER=en_CA.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C >> >> attached base packages: >> [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" >> [7] "base" >> >> ______________________________________________ >> R-devel at r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel >