Full_Name: Agustin Perez Version: 2.3.1 OS: Debian 2.6.8-11-amd64-generic Submission from: (NULL) (193.147.142.6) First of all excuses for my bad use of english and thanks for read my problem. Well when I do the following comand in R suddenly crashes and exit me for the enviroment:> a<-matrix(1:13500,450,30) > a%*%t(a)*** caught illegal operation *** address 0x2a9590086f, cause 'illegal operand' Possible actions: 1: abort (with core dump) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: 3 I don't know what is the problem. Agust?n
On Wed, 19 Jul 2006, agustin.perez at umh.es wrote:> Full_Name: Agustin Perez > Version: 2.3.1 > OS: Debian 2.6.8-11-amd64-generic > Submission from: (NULL) (193.147.142.6) > > > First of all excuses for my bad use of english and thanks for read my problem. > > Well when I do the following comand in R suddenly crashes and exit me for the > enviroment: > > > a<-matrix(1:13500,450,30) > > a%*%t(a) > > *** caught illegal operation *** > address 0x2a9590086f, cause 'illegal operand' > > Possible actions: > 1: abort (with core dump) > 2: normal R exit > 3: exit R without saving workspace > 4: exit R saving workspace > Selection: 3 > > > I don't know what is the problem.Quite likely using a BLAS inappropriate for the chip in use. If you choose 1 and examine the core dump with gdb you will be able to tell us where the illegal operand occurred. -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
Well, first I´m going to write the output of gdb:
agustin.perez@pitagoras:~$ gdb R core
GNU gdb 6.3-debian
Copyright 2004 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and
you are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB. Type "show warranty"
for
details.
This GDB was configured as
"x86_64-linux"..."/usr/bin/R": not in
executable format: No se reconoce el formato del fichero
Using host libthread_db library "/lib/libthread_db.so.1".
Core was generated by `/home/agustin.perez/R-2.3.1/bin/exec/R'.
Program terminated with signal 4, Illegal instruction.
#0 0x0000002a9590086f in ?? ()
And now this is the output of dpkg -l | grep "blas\|lapack"| cut -c-79
:
agustin.perez@pitagoras:~$ dpkg -l | grep "blas\|lapack"| cut
-c-79
ii refblas3 1.2-8 Basic Linear Algebra Subroutines 3,
shared l
ii refblas3-dev 1.2-8 Basic Linear Algebra Subroutines 3, static
l
agustin.perez@pitagoras:~$
-----Mensaje original-----
De: Dirk Eddelbuettel [mailto:edd@debian.org]
Enviado el: miércoles, 19 de julio de 2006 13:20
Para: agustin.perez@umh.es; ripley@stats.ox.ac.uk
CC: r-devel@stat.math.ethz.ch; R-bugs@biostat.ku.dk
Asunto: Re: [Rd] illegal operation in debian (PR#9086)
On 19 July 2006 at 12:48, ripley@stats.ox.ac.uk wrote:
| On Wed, 19 Jul 2006, agustin.perez@umh.es wrote:
|
| > Full_Name: Agustin Perez
| > Version: 2.3.1
| > OS: Debian 2.6.8-11-amd64-generic
| > Submission from: (NULL) (193.147.142.6)
| >
| >
| > First of all excuses for my bad use of english and thanks for read my
problem.
| >
| > Well when I do the following comand in R suddenly crashes and exit me
for the
| > enviroment:
| >
| > > a<-matrix(1:13500,450,30)
| > > a%*%t(a)
| >
| > *** caught illegal operation ***
| > address 0x2a9590086f, cause 'illegal operand'
| >
| > Possible actions:
| > 1: abort (with core dump)
| > 2: normal R exit
| > 3: exit R without saving workspace
| > 4: exit R saving workspace
| > Selection: 3
| >
| >
| > I don't know what is the problem.
|
| Quite likely using a BLAS inappropriate for the chip in use.
Yes, that is very likely -- the command just worked on my Debian
system. Please show us the result of
$ dpkg -l | grep "blas\|lapack"| cut -c-79
Dirk
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Program received signal SIGILL, Illegal instruction. 0x0000002a9590086f in ATL_dupKBmm30_1_1_b0 () from /usr/lib/atlas/libblas.so.3 -----Mensaje original----- De: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk] Enviado el: mi?rcoles, 19 de julio de 2006 14:23 Para: Perez Martin, Agustin CC: 'Dirk Eddelbuettel'; r-devel at stat.math.ethz.ch Asunto: RE: [Rd] illegal operation in debian (PR#9086) On Wed, 19 Jul 2006, Perez Martin, Agustin wrote:> Well, first I?m going to write the output of gdb:Used incorrectly: you need to use gdb /path/to/R/bin/exec/R <corefile> and perhaps 'where' at the gdb prompt. (Or run R -d gdb.)> agustin.perez at pitagoras:~$ gdb R core > > GNU gdb 6.3-debian > > Copyright 2004 Free Software Foundation, Inc. > > GDB is free software, covered by the GNU General Public License, and > you are > > welcome to change it and/or distribute copies of it under certain > conditions. > > Type "show copying" to see the conditions. > > There is absolutely no warranty for GDB. Type "show warranty" for > details. > > This GDB was configured as "x86_64-linux"..."/usr/bin/R": not in > executable format: No se reconoce el formato del fichero > > > > Using host libthread_db library "/lib/libthread_db.so.1". > > Core was generated by `/home/agustin.perez/R-2.3.1/bin/exec/R'. > > Program terminated with signal 4, Illegal instruction. > > #0 0x0000002a9590086f in ?? ()... -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 -- No virus found in this incoming message. --