R devel - Sep 2004 - Rgraphviz compilation error

Hi,

I am installing Rgraphviz at Linux Fedora Core 2 with
32 bit AMD athlon with 512 RAM.

I have installed graphviz version:
graphviz-1.16-1.src.rpm installed already on system. 

I am doing: 

$ R CMD INSTALL  -l /usr/local/lib/R/library   
  Rgraphviz_1.4.0.tar.gz
---------------------------------
* Installing *source* package 'Rgraphviz' ...
** libs
gcc -I/usr/local/lib/R/include `dotneato-config
--cflags`  -I/usr/local/include -D__NO_MATH_INLINES
-mieee-fp -Wall -fPIC  -g -O2 -c Rgraphviz.c -o
Rgraphviz.o
In file included from
/usr/local/include/graphviz/render.h:45,
                 from common.h:21,
                 from Rgraphviz.c:1:
/usr/local/include/graphviz/macros.h:34:1: warning:
"NEW" redefined
In file included from common.h:13,
                 from Rgraphviz.c:1:
/usr/local/lib/R/include/Rdefines.h:129:1: warning:
this is the location of the previous definition
Rgraphviz.c: In function `Rgraphviz_agopen':
Rgraphviz.c:244: warning: implicit declaration of
function `GD_gvc'
Rgraphviz.c:244: error: invalid lvalue in assignment
make: *** [Rgraphviz.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'
** Removing '/usr/local/lib/R/library/Rgraphviz'
--------------------

please let me know...if someone has same problem,

Thanks,
Saurin

On Wed, Sep 22, 2004 at 01:11:35PM -0700, Saurin Jani wrote:
[...]
> I have installed graphviz version:
> graphviz-1.16-1.src.rpm installed already on system. 
[...]
> $ R CMD INSTALL  -l /usr/local/lib/R/library   
>   Rgraphviz_1.4.0.tar.gz
[...]
> make: *** [Rgraphviz.o] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
> ** Removing '/usr/local/lib/R/library/Rgraphviz'
> --------------------
> 
> please let me know...if someone has same problem,
RGraphviz 1.4.0 says this in its README:

  Installing Rgraphviz:
  
  The Rgraphviz package requires a bit of extra work beyond 
  simply installing the package itself to run properly.  The user
  must first have installed the GraphViz software provided by AT&T.
  For users of the release version of Rgraphviz from Bioconductor 1.3,
  this must be Graphviz version 1.10.  For users of Rgraphviz for
  Bioconductor 1.4 (or the devel versions leading up to the 1.4 release)
  this must be Graphviz version 1.12.
  
So you may have to back out graphviz-1.16.

For what it's worth, RGraphviz-1.4.0 built on my Debian testing system (on
which graphviz 1.12 is installed) as a script-generated Debian package which
is available, along with over 400 other CRAN/BioC packages, as part of
Quantian -- see http://dirk.eddelbuettel.com/quantian

Dirk

-- 
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