maechler@stat.math.ethz.ch
2001-Sep-24 12:00 UTC
[Rd] cor.test(x,x) sometimes produce NaN (PR#1099)
This *is* kind of a bug, hence diverted to R-bugs>>>>> "Peter" == Peter Malewski <peter.malewski@gmx.de> writes:Peter> In the code >> for(i in 1:100){zz <- rnorm(10);print(cor.test(zz,zz))} Peter> sometimes a sqrt(0) occures: Peter> 24: NaNs produced in: sqrt(1 - r^2) I found that the reason is that in (at least one of) those cases, r == 1+eps where eps = .Machine$double.eps which I think is the real bug, here. Here is a reproducible example: > set.seed(125);z0 <- rnorm(40);zz <- round(rnorm(10),5); r <- cor(zz,zz) > r-1 [1] 2.220446e-16 Peter> in all the other cases a result like (for me, not in all, but quite a few cases) Peter> t = Inf, df = 8, p-value = < 2.2e-16 which I think is entirely correct. Peter> occurs. Does cor.test need some more "inf" - handling? I found Peter> that calculating a cor-matrix with additional p-values. (last sentence is a bit unclear to MM). Martin Maechler <maechler@stat.math.ethz.ch> http://stat.ethz.ch/~maechler/ Seminar fuer Statistik, ETH-Zentrum LEO D10 Leonhardstr. 27 ETH (Federal Inst. Technology) 8092 Zurich SWITZERLAND phone: x-41-1-632-3408 fax: ...-1228 <>< -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._