R devel - Nov 1999 - discrepancy between PACKAGES file and contents of the contrib directory (PR#309)

Full_Name: Hervé Dréau
Version: not  applicable
OS: not  applicable
Submission from: (NULL) (212.198.234.254)


Here's the listing of difference in version and existence between the
PACKAGES
file found in the contrib directory and the content of the directory.
This cause a problem with the automatic install (and upgrade) of packages 

NISTnls
0.9-1 
NISTnls_0.9-2.tar.gz

bats not found in /R/src/contrib

VR_5.3pl037-2.tar.gz not found in PACKAGES

coda 
0.4-5 
coda_0.4-7.tar.gz 

Package: mclust
1.0-1 
mclust_1.1-1.tar.gz

nnet not found in /R/src/contrib
ppr not found in /R/src/contrib

ratetables_1.0-2.tar.gz not found in PACKAGES

rmtools not found in /R/src/contrib

 rpart
1.0-6  rpart_1.0-7.tar.gz

sfb not found in /R/src/contrib
spatial not found in /R/src/contrib

splines
2.0-3 splines_2.0-6.tar.gz

survival4
1.1-0 survival4_1.4-0.tar.gz

Best regard 
Hervé Dréau

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Le mer, 03 nov 1999 08:53:58 Prof Brian D Ripleya écrit
:
> Yesterday I asked privately which mirror's PACKAGES file this was after
an
> earlier post, as I could not (and still cannot) get to Vienna. But AFAIK
> 
Sorry but I have had replied to you privatelly yesterday.

In this lost (?) mail i said :

 Thank you for your response.
 I use the master CRAN server, I notice some network weekness, but i think 
 if it is the master server all other are just mirror, and the PACKAGES file
 may be  the most recent in the master server.
 After your mail, i compare the content of the PACKAGES file in master CRAN
 and in some mirrors and i found that the tuwien one is the more accurate.
 
 The mirror in italy is particulary old (timestamp on the PACKAGES file is near
one
 year old).
 The PACKAGES file in ethz.ch is nearly the same as the one in tuwien (minus the
new (?)
  norm package).
 
 Her's a little (and quickly) summary of the discrepancy between the file
PACKAGES and
 the content  of the contrib directory in tuwien

... inserted the report send to r-bug

> rpart's entry had been updated after I reported that one
> rmtools is not on CRAN
> bats is in devel, not in the contrib directory
> ppr is in Old, not in the contrib directory
> nnet and spatial are nowhere (as part of VR), and VR is not a package
>   but a package bundle: we know those are not yet covered by
>   update.packages.
Perhaps but i think all the entry in PACKAGES are listed by 
CRAN.packages()
could not verify in this time : the url at tuwien is unreachable
but using another mirror :
CRAN.packages(CRAN="http://lib.stat.cmu.edu/R/CRAN")
[10,] "bats"                                 "0.1-2" 
[49,] "rmtools"                              "0.2"   
[43,] "ppr"                                  "1.1-2" 
[54,] "spatial"                              "5.3pl035-1"
[38,] "nnet"                                 "5.3pl035-1"
[43,] "ppr"                                  "1.1-2"     

It's only confusing to list packages that are unavailable and cause
"false"
error message.
> 
> The update mechanism does depend on a consistent naming scheme, with
> DESCRIPTION entires and file names matching. Fritz Leisch is working on a
> checker, but we do rely on authors at present. For example. the DESCRIPTION
> file in splines_2.0-6.tar.gz has version 2.0-3. Authors: please do check!
> 
> 
> On Wed, 3 Nov 1999 hdreau@cybercable.fr wrote:
> 
> > Full_Name: Hervé Dréau
> > Version: not  applicable
> > OS: not  applicable
> 
> Sorry, those _are_ applicable. The Unix and Windows versions of
> update.packages are quite distinct. I have assumed Unix was meant.
Perhaps but it's not related to my version of R it's only a comparison
between the content of a file and the listing of a directory.
If that matter :
OS linux Redhat 6.1
R 0.65.1

Best regards

Hervé Dréau



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