Kay Diederichs
2020-Jan-23 14:55 UTC
[CentOS] yum update / kernal update failed - remove or repair
On 1/22/20 3:57 PM, Gary Stainburn wrote:> I have managed to find out what happened in the yum update and it turns out it was a mess. It looks like the server ran out of memory in the middle and things then started to fail. Any advice on how to recover from this would be greatly appreciated > > The log below shows: > > [root at vps2 ~]# yum history info 22 > Loaded plugins: fastestmirror, langpacks > Repository mariadb is listed more than once in the configuration > Transaction ID : 22 > Begin time : Sun Jan 19 18:15:33 2020 > Begin rpmdb : 795:6c5cd82e3ada047c7071fea1524f41fd13fab6a1 > End time : 19:19:32 2020 (63 minutes) > End rpmdb : 801:6d1b278ccbeef6f68ff494cb28eaed5c7be4124b > User : root <root> > Return-Code : Failure: 1 > Command Line : update > Transaction performed with: > Installed rpm-4.11.3-40.el7.x86_64 @anaconda > Installed yum-3.4.3-163.el7.centos.noarch @anaconda > Installed yum-plugin-fastestmirror-1.1.31-52.el7.noarch @anaconda > Packages Altered: > Updated MariaDB-client-10.4.10-1.el7.centos.x86_64 @mariadb > Update 10.4.11-1.el7.centos.x86_64 @mariadb > Updated MariaDB-common-10.4.10-1.el7.centos.x86_64 @mariadb > Update 10.4.11-1.el7.centos.x86_64 @mariadb > Updated MariaDB-compat-10.4.10-1.el7.centos.x86_64 @mariadb > Update 10.4.11-1.el7.centos.x86_64 @mariadb > ** Updated MariaDB-server-10.4.10-1.el7.centos.x86_64 @mariadb > Loading mirror speeds from cached hostfile > * base: mirror.as29550.net > * epel: www.mirrorservice.org > * extras: www.mirrorservice.org > * remi-php73: mirrors.ukfast.co.uk > * remi-safe: mirrors.ukfast.co.uk > * updates: www.mirrorservice.org > ** Update 10.4.11-1.el7.centos.x86_64 @?mariadb > ** Updated MariaDB-shared-10.4.10-1.el7.centos.x86_64 @mariadb > Update 10.4.11-1.el7.centos.x86_64 @mariadb > ** Updated ca-certificates-2018.2.22-70.0.el7_5.noarch @anaconda > ** Update 2019.2.32-76.el7_7.noarch @?updates > Updated certbot-0.39.0-1.el7.noarch @epel > Update 1.0.0-1.el7.noarch @epel > Updated clamav-0.101.4-1.el7.x86_64 @epel > Update 0.101.5-1.el7.x86_64 @epel > Updated clamav-data-0.101.4-1.el7.noarch @epel > Update 0.101.5-1.el7.noarch @epel > Updated clamav-devel-0.101.4-1.el7.x86_64 @epel > Update 0.101.5-1.el7.x86_64 @epel > Updated clamav-filesystem-0.101.4-1.el7.noarch @epel > Update 0.101.5-1.el7.noarch @epel > Updated clamav-lib-0.101.4-1.el7.x86_64 @epel > Update 0.101.5-1.el7.x86_64 @epel > Updated clamav-update-0.101.4-1.el7.x86_64 @epel > Update 0.101.5-1.el7.x86_64 @epel > Updated clamd-0.101.4-1.el7.x86_64 @epel > Update 0.101.5-1.el7.x86_64 @epel > Updated curl-7.29.0-54.el7.x86_64 @anaconda > Update 7.29.0-54.el7_7.1.x86_64 @updates > Updated fail2ban-0.9.7-1.el7.noarch @epel > Update 0.10.4-1.el7.noarch @epel > Updated fail2ban-firewalld-0.9.7-1.el7.noarch @epel > Update 0.10.4-1.el7.noarch @epel > Updated fail2ban-sendmail-0.9.7-1.el7.noarch @epel > Update 0.10.4-1.el7.noarch @epel > Updated fail2ban-server-0.9.7-1.el7.noarch @epel > Update 0.10.4-1.el7.noarch @epel > Updated fail2ban-systemd-0.9.7-1.el7.noarch @epel > Update 0.10.4-1.el7.noarch @epel > Updated fribidi-1.0.2-1.el7.x86_64 @anaconda > Update 1.0.2-1.el7_7.1.x86_64 @updates > Updated iproute-4.11.0-25.el7.x86_64 @anaconda > Update 4.11.0-25.el7_7.2.x86_64 @updates > Install kernel-3.10.0-1062.9.1.el7.x86_64 @updates > Updated kernel-headers-3.10.0-1062.4.3.el7.x86_64 @updates > Update 3.10.0-1062.9.1.el7.x86_64 @updates > Updated kernel-tools-3.10.0-1062.4.3.el7.x86_64 @updates > Update 3.10.0-1062.9.1.el7.x86_64 @updates > Updated kernel-tools-libs-3.10.0-1062.4.3.el7.x86_64 @updates > Update 3.10.0-1062.9.1.el7.x86_64 @updates > Updated libblkid-2.23.2-61.el7.x86_64 @anaconda > Update 2.23.2-61.el7_7.1.x86_64 @updates > Updated libcurl-7.29.0-54.el7.x86_64 @anaconda > Update 7.29.0-54.el7_7.1.x86_64 @updates > Updated libgs-9.25-2.el7_7.2.x86_64 @updates > Update 9.25-2.el7_7.3.x86_64 @updates > Updated libmount-2.23.2-61.el7.x86_64 @anaconda > Update 2.23.2-61.el7_7.1.x86_64 @updates > Updated libsmartcols-2.23.2-61.el7.x86_64 @anaconda > Update 2.23.2-61.el7_7.1.x86_64 @updates > Updated libsss_idmap-1.16.4-21.el7.x86_64 @anaconda > Update 1.16.4-21.el7_7.1.x86_64 @updates > Updated libsss_nss_idmap-1.16.4-21.el7.x86_64 @anaconda > Update 1.16.4-21.el7_7.1.x86_64 @updates > Updated libuuid-2.23.2-61.el7.x86_64 @anaconda > Update 2.23.2-61.el7_7.1.x86_64 @updates > Updated libwebp7-1.0.2-1.el7.remi.x86_64 @remi-safe > Update 1.0.3-1.el7.remi.x86_64 @remi-safe > ** Updated microcode_ctl-2:2.1-53.3.el7_7.x86_64 @updates > Update 2:2.1-53.7.el7_7.x86_64 @updates > Updated nss-3.44.0-4.el7.x86_64 @anaconda > Update 3.44.0-7.el7_7.x86_64 @updates > Updated nss-softokn-3.44.0-5.el7.x86_64 @anaconda > Update 3.44.0-8.el7_7.x86_64 @updates > Updated nss-softokn-freebl-3.44.0-5.el7.x86_64 @anaconda > Update 3.44.0-8.el7_7.x86_64 @updates > Updated nss-sysinit-3.44.0-4.el7.x86_64 @anaconda > Update 3.44.0-7.el7_7.x86_64 @updates > Updated nss-tools-3.44.0-4.el7.x86_64 @anaconda > Update 3.44.0-7.el7_7.x86_64 @updates > Updated nss-util-3.44.0-3.el7.x86_64 @anaconda > Update 3.44.0-4.el7_7.x86_64 @updates > Updated numactl-libs-2.0.12-3.el7.x86_64 @anaconda > Update 2.0.12-3.el7_7.1.x86_64 @updates > Updated pgdg-redhat-repo-42.0-5.noarch @/pgdg-centos10-10-2.noarch > Update 42.0-6.noarch @pgdg10 > Updated php-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-cli-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-common-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-gd-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-json-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-ldap-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-mysqlnd-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-odbc-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-pdo-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > ** Updated php-pear-1:1.10.10-2.el7.remi.noarch @remi-php70 > ** Update 1:1.10.10-4.el7.remi.noarch @?remi-php73 > Updated php-pgsql-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-process-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-xml-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated php-xmlrpc-7.3.12-1.el7.remi.x86_64 @remi-php73 > Update 7.3.13-1.el7.remi.x86_64 @remi-php73 > Updated postgresql10-10.11-1PGDG.rhel7.x86_64 @pgdg10 > Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 > Updated postgresql10-contrib-10.11-1PGDG.rhel7.x86_64 @pgdg10 > Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 > Updated postgresql10-libs-10.11-1PGDG.rhel7.x86_64 @pgdg10 > Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 > ** Updated postgresql10-server-10.11-1PGDG.rhel7.x86_64 @pgdg10 > Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 > ** Updated proftpd-1.3.5e-7.el7.x86_64 @epel > Update 1.3.5e-8.el7.x86_64 @epel > Updated python-perf-3.10.0-1062.4.3.el7.x86_64 @updates > Update 3.10.0-1062.9.1.el7.x86_64 @updates > Updated python-requests-2.6.0-7.el7_7.noarch @updates > Update 2.6.0-8.el7_7.noarch @updates > Updated python2-acme-0.39.0-1.el7.noarch @epel > Update 1.0.0-1.el7.noarch @epel > Updated python2-certbot-0.39.0-1.el7.noarch @epel > Update 1.0.0-1.el7.noarch @epel > Updated python2-certbot-apache-0.39.0-1.el7.noarch @epel > Update 1.0.0-1.el7.noarch @epel > Updated selinux-policy-3.13.1-252.el7.1.noarch @updates > Update 3.13.1-252.el7_7.6.noarch @updates > Updated selinux-policy-targeted-3.13.1-252.el7.1.noarch @updates > Update 3.13.1-252.el7_7.6.noarch @updates > Updated sos-3.7-7.el7.centos.noarch @updates > Update 3.7-10.el7.centos.noarch @updates > ** Updated sssd-client-1.16.4-21.el7.x86_64 @anaconda > Update 1.16.4-21.el7_7.1.x86_64 @updates > Updated tcpdump-14:4.9.2-4.el7.x86_64 @anaconda > Update 14:4.9.2-4.el7_7.1.x86_64 @updates > Updated util-linux-2.23.2-61.el7.x86_64 @anaconda > Update 2.23.2-61.el7_7.1.x86_64 @updates > Scriptlet output: > 1 error: Couldn't fork %post(libsss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory > 2 error: Couldn't fork %post(libsss_nss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory > 3 error: Couldn't fork %pre(ca-certificates-2019.2.32-76.el7_7.noarch): Cannot allocate memory > 4 error: ca-certificates-2019.2.32-76.el7_7.noarch: install failed > 5 error: Couldn't fork %post(certbot-1.0.0-1.el7.noarch): Cannot allocate memory > 6 error: Couldn't fork %pre(MariaDB-server-10.4.11-1.el7.centos.x86_64): Cannot allocate memory > 7 error: MariaDB-server-10.4.11-1.el7.centos.x86_64: install failed > 8 error: Couldn't fork %post(sssd-client-1.16.4-21.el7_7.1.x86_64): Cannot allocate memory > 9 error: Couldn't fork %post(kernel-tools-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory > 10 error: Couldn't fork %pre(php-pear-1:1.10.10-4.el7.remi.noarch): Cannot allocate memory > 11 error: php-pear-1:1.10.10-4.el7.remi.noarch: install failed > 12 warning: /etc/clamd.d/scan.conf created as /etc/clamd.d/scan.conf.rpmnew > 13 error: Couldn't fork %triggerin(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory > 14 error: php-pear-1:1.10.10-2.el7.remi.noarch: erase skipped > 15 error: MariaDB-server-10.4.10-1.el7.centos.x86_64: erase skipped > 16 error: Couldn't fork %preun(MariaDB-shared-10.4.10-1.el7.centos.x86_64): Cannot allocate memory > 17 error: MariaDB-shared-10.4.10-1.el7.centos.x86_64: erase failed > 18 error: Couldn't fork %postun(MariaDB-compat-10.4.10-1.el7.centos.x86_64): Cannot allocate memory > 19 error: ca-certificates-2018.2.22-70.0.el7_5.noarch: erase skipped > 20 error: Couldn't fork %preun(microcode_ctl-2:2.1-53.3.el7_7.x86_64): Cannot allocate memory > 21 error: microcode_ctl-2:2.1-53.3.el7_7.x86_64: erase failed > 22 error: Couldn't fork %preun(postgresql10-server-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory > 23 error: postgresql10-server-10.11-1PGDG.rhel7.x86_64: erase failed > 24 error: Couldn't fork %postun(libmount-2.23.2-61.el7.x86_64): Cannot allocate memory > 25 error: Couldn't fork %preun(sssd-client-1.16.4-21.el7.x86_64): Cannot allocate memory > 26 error: sssd-client-1.16.4-21.el7.x86_64: erase failed > 27 error: Couldn't fork %postun(libblkid-2.23.2-61.el7.x86_64): Cannot allocate memory > 28 error: Couldn't fork %postun(postgresql10-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory > 29 error: Couldn't fork %postun(clamav-lib-0.101.4-1.el7.x86_64): Cannot allocate memory > 30 error: Couldn't fork %postun(kernel-tools-3.10.0-1062.4.3.el7.x86_64): Cannot allocate memory > 31 error: Couldn't fork %postun(libcurl-7.29.0-54.el7.x86_64): Cannot allocate memory > 32 error: Couldn't fork %postun(nss-3.44.0-4.el7.x86_64): Cannot allocate memory > 33 error: Couldn't fork %postun(nss-softokn-3.44.0-5.el7.x86_64): Cannot allocate memory > 34 error: Couldn't fork %postun(nss-util-3.44.0-3.el7.x86_64): Cannot allocate memory > 35 error: Couldn't fork %postun(postgresql10-libs-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory > 36 error: Couldn't fork %postun(libuuid-2.23.2-61.el7.x86_64): Cannot allocate memory > 37 error: Couldn't fork %postun(libsss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory > 38 error: Couldn't fork %postun(libsss_nss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory > 39 error: Couldn't fork %postun(libsmartcols-2.23.2-61.el7.x86_64): Cannot allocate memory > 40 error: Couldn't fork %postun(libwebp7-1.0.2-1.el7.remi.x86_64): Cannot allocate memory > 41 error: Couldn't fork %postun(fribidi-1.0.2-1.el7.x86_64): Cannot allocate memory > 42 error: Couldn't fork %preun(proftpd-1.3.5e-7.el7.x86_64): Cannot allocate memory > 43 error: proftpd-1.3.5e-7.el7.x86_64: erase failed > 44 error: Couldn't fork %postun(numactl-libs-2.0.12-3.el7.x86_64): Cannot allocate memory > 45 error: Couldn't fork %posttrans(kernel-3.10.0-1062.9.1.el7.x86_64): Cannot allocate memory > 46 error: Couldn't fork %posttrans(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate memory > history info > [root at vps2 ~]# >Before you try the update again, you'll have to fix the reason for the failure - add memory, or at least add a swap file. You could check with rpm -qa --last | head -20 which the latest packages are that were installed. If the rpm database is corrupted, rebuild it with rpm --rebuilddb You can reinstall packages that may not be completely installed, using rpm --reinstall PACKAGE_FILE I'd rpm --erase the kernel package that does not boot. HTH, Kay
Simon Matter
2020-Jan-23 15:22 UTC
[CentOS] yum update / kernal update failed - remove or repair
> On 1/22/20 3:57 PM, Gary Stainburn wrote: >> I have managed to find out what happened in the yum update and it turns >> out it was a mess. It looks like the server ran out of memory in the >> middle and things then started to fail. Any advice on how to recover >> from this would be greatly appreciated >> >> The log below shows: >> >> [root at vps2 ~]# yum history info 22 >> Loaded plugins: fastestmirror, langpacks >> Repository mariadb is listed more than once in the configuration >> Transaction ID : 22 >> Begin time : Sun Jan 19 18:15:33 2020 >> Begin rpmdb : 795:6c5cd82e3ada047c7071fea1524f41fd13fab6a1 >> End time : 19:19:32 2020 (63 minutes) >> End rpmdb : 801:6d1b278ccbeef6f68ff494cb28eaed5c7be4124b >> User : root <root> >> Return-Code : Failure: 1 >> Command Line : update >> Transaction performed with: >> Installed rpm-4.11.3-40.el7.x86_64 >> @anaconda >> Installed yum-3.4.3-163.el7.centos.noarch >> @anaconda >> Installed yum-plugin-fastestmirror-1.1.31-52.el7.noarch >> @anaconda >> Packages Altered: >> Updated MariaDB-client-10.4.10-1.el7.centos.x86_64 @mariadb >> Update 10.4.11-1.el7.centos.x86_64 @mariadb >> Updated MariaDB-common-10.4.10-1.el7.centos.x86_64 @mariadb >> Update 10.4.11-1.el7.centos.x86_64 @mariadb >> Updated MariaDB-compat-10.4.10-1.el7.centos.x86_64 @mariadb >> Update 10.4.11-1.el7.centos.x86_64 @mariadb >> ** Updated MariaDB-server-10.4.10-1.el7.centos.x86_64 @mariadb >> Loading mirror speeds from cached hostfile >> * base: mirror.as29550.net >> * epel: www.mirrorservice.org >> * extras: www.mirrorservice.org >> * remi-php73: mirrors.ukfast.co.uk >> * remi-safe: mirrors.ukfast.co.uk >> * updates: www.mirrorservice.org >> ** Update 10.4.11-1.el7.centos.x86_64 @?mariadb >> ** Updated MariaDB-shared-10.4.10-1.el7.centos.x86_64 @mariadb >> Update 10.4.11-1.el7.centos.x86_64 @mariadb >> ** Updated ca-certificates-2018.2.22-70.0.el7_5.noarch @anaconda >> ** Update 2019.2.32-76.el7_7.noarch @?updates >> Updated certbot-0.39.0-1.el7.noarch @epel >> Update 1.0.0-1.el7.noarch @epel >> Updated clamav-0.101.4-1.el7.x86_64 @epel >> Update 0.101.5-1.el7.x86_64 @epel >> Updated clamav-data-0.101.4-1.el7.noarch @epel >> Update 0.101.5-1.el7.noarch @epel >> Updated clamav-devel-0.101.4-1.el7.x86_64 @epel >> Update 0.101.5-1.el7.x86_64 @epel >> Updated clamav-filesystem-0.101.4-1.el7.noarch @epel >> Update 0.101.5-1.el7.noarch @epel >> Updated clamav-lib-0.101.4-1.el7.x86_64 @epel >> Update 0.101.5-1.el7.x86_64 @epel >> Updated clamav-update-0.101.4-1.el7.x86_64 @epel >> Update 0.101.5-1.el7.x86_64 @epel >> Updated clamd-0.101.4-1.el7.x86_64 @epel >> Update 0.101.5-1.el7.x86_64 @epel >> Updated curl-7.29.0-54.el7.x86_64 @anaconda >> Update 7.29.0-54.el7_7.1.x86_64 @updates >> Updated fail2ban-0.9.7-1.el7.noarch @epel >> Update 0.10.4-1.el7.noarch @epel >> Updated fail2ban-firewalld-0.9.7-1.el7.noarch @epel >> Update 0.10.4-1.el7.noarch @epel >> Updated fail2ban-sendmail-0.9.7-1.el7.noarch @epel >> Update 0.10.4-1.el7.noarch @epel >> Updated fail2ban-server-0.9.7-1.el7.noarch @epel >> Update 0.10.4-1.el7.noarch @epel >> Updated fail2ban-systemd-0.9.7-1.el7.noarch @epel >> Update 0.10.4-1.el7.noarch @epel >> Updated fribidi-1.0.2-1.el7.x86_64 @anaconda >> Update 1.0.2-1.el7_7.1.x86_64 @updates >> Updated iproute-4.11.0-25.el7.x86_64 @anaconda >> Update 4.11.0-25.el7_7.2.x86_64 @updates >> Install kernel-3.10.0-1062.9.1.el7.x86_64 @updates >> Updated kernel-headers-3.10.0-1062.4.3.el7.x86_64 @updates >> Update 3.10.0-1062.9.1.el7.x86_64 @updates >> Updated kernel-tools-3.10.0-1062.4.3.el7.x86_64 @updates >> Update 3.10.0-1062.9.1.el7.x86_64 @updates >> Updated kernel-tools-libs-3.10.0-1062.4.3.el7.x86_64 @updates >> Update 3.10.0-1062.9.1.el7.x86_64 @updates >> Updated libblkid-2.23.2-61.el7.x86_64 @anaconda >> Update 2.23.2-61.el7_7.1.x86_64 @updates >> Updated libcurl-7.29.0-54.el7.x86_64 @anaconda >> Update 7.29.0-54.el7_7.1.x86_64 @updates >> Updated libgs-9.25-2.el7_7.2.x86_64 @updates >> Update 9.25-2.el7_7.3.x86_64 @updates >> Updated libmount-2.23.2-61.el7.x86_64 @anaconda >> Update 2.23.2-61.el7_7.1.x86_64 @updates >> Updated libsmartcols-2.23.2-61.el7.x86_64 @anaconda >> Update 2.23.2-61.el7_7.1.x86_64 @updates >> Updated libsss_idmap-1.16.4-21.el7.x86_64 @anaconda >> Update 1.16.4-21.el7_7.1.x86_64 @updates >> Updated libsss_nss_idmap-1.16.4-21.el7.x86_64 @anaconda >> Update 1.16.4-21.el7_7.1.x86_64 @updates >> Updated libuuid-2.23.2-61.el7.x86_64 @anaconda >> Update 2.23.2-61.el7_7.1.x86_64 @updates >> Updated libwebp7-1.0.2-1.el7.remi.x86_64 @remi-safe >> Update 1.0.3-1.el7.remi.x86_64 @remi-safe >> ** Updated microcode_ctl-2:2.1-53.3.el7_7.x86_64 @updates >> Update 2:2.1-53.7.el7_7.x86_64 @updates >> Updated nss-3.44.0-4.el7.x86_64 @anaconda >> Update 3.44.0-7.el7_7.x86_64 @updates >> Updated nss-softokn-3.44.0-5.el7.x86_64 @anaconda >> Update 3.44.0-8.el7_7.x86_64 @updates >> Updated nss-softokn-freebl-3.44.0-5.el7.x86_64 @anaconda >> Update 3.44.0-8.el7_7.x86_64 @updates >> Updated nss-sysinit-3.44.0-4.el7.x86_64 @anaconda >> Update 3.44.0-7.el7_7.x86_64 @updates >> Updated nss-tools-3.44.0-4.el7.x86_64 @anaconda >> Update 3.44.0-7.el7_7.x86_64 @updates >> Updated nss-util-3.44.0-3.el7.x86_64 @anaconda >> Update 3.44.0-4.el7_7.x86_64 @updates >> Updated numactl-libs-2.0.12-3.el7.x86_64 @anaconda >> Update 2.0.12-3.el7_7.1.x86_64 @updates >> Updated pgdg-redhat-repo-42.0-5.noarch >> @/pgdg-centos10-10-2.noarch >> Update 42.0-6.noarch @pgdg10 >> Updated php-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-cli-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-common-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-gd-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-json-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-ldap-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-mysqlnd-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-odbc-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-pdo-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> ** Updated php-pear-1:1.10.10-2.el7.remi.noarch >> @remi-php70 >> ** Update 1:1.10.10-4.el7.remi.noarch >> @?remi-php73 >> Updated php-pgsql-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-process-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-xml-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated php-xmlrpc-7.3.12-1.el7.remi.x86_64 >> @remi-php73 >> Update 7.3.13-1.el7.remi.x86_64 >> @remi-php73 >> Updated postgresql10-10.11-1PGDG.rhel7.x86_64 @pgdg10 >> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 >> Updated postgresql10-contrib-10.11-1PGDG.rhel7.x86_64 @pgdg10 >> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 >> Updated postgresql10-libs-10.11-1PGDG.rhel7.x86_64 @pgdg10 >> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 >> ** Updated postgresql10-server-10.11-1PGDG.rhel7.x86_64 @pgdg10 >> Update 10.11-2PGDG.rhel7.x86_64 @pgdg10 >> ** Updated proftpd-1.3.5e-7.el7.x86_64 @epel >> Update 1.3.5e-8.el7.x86_64 @epel >> Updated python-perf-3.10.0-1062.4.3.el7.x86_64 @updates >> Update 3.10.0-1062.9.1.el7.x86_64 @updates >> Updated python-requests-2.6.0-7.el7_7.noarch @updates >> Update 2.6.0-8.el7_7.noarch @updates >> Updated python2-acme-0.39.0-1.el7.noarch @epel >> Update 1.0.0-1.el7.noarch @epel >> Updated python2-certbot-0.39.0-1.el7.noarch @epel >> Update 1.0.0-1.el7.noarch @epel >> Updated python2-certbot-apache-0.39.0-1.el7.noarch @epel >> Update 1.0.0-1.el7.noarch @epel >> Updated selinux-policy-3.13.1-252.el7.1.noarch @updates >> Update 3.13.1-252.el7_7.6.noarch @updates >> Updated selinux-policy-targeted-3.13.1-252.el7.1.noarch @updates >> Update 3.13.1-252.el7_7.6.noarch @updates >> Updated sos-3.7-7.el7.centos.noarch @updates >> Update 3.7-10.el7.centos.noarch @updates >> ** Updated sssd-client-1.16.4-21.el7.x86_64 @anaconda >> Update 1.16.4-21.el7_7.1.x86_64 @updates >> Updated tcpdump-14:4.9.2-4.el7.x86_64 @anaconda >> Update 14:4.9.2-4.el7_7.1.x86_64 @updates >> Updated util-linux-2.23.2-61.el7.x86_64 @anaconda >> Update 2.23.2-61.el7_7.1.x86_64 @updates >> Scriptlet output: >> 1 error: Couldn't fork %post(libsss_idmap-1.16.4-21.el7_7.1.x86_64): >> Cannot allocate memory >> 2 error: Couldn't fork >> %post(libsss_nss_idmap-1.16.4-21.el7_7.1.x86_64): Cannot allocate >> memory >> 3 error: Couldn't fork >> %pre(ca-certificates-2019.2.32-76.el7_7.noarch): Cannot allocate >> memory >> 4 error: ca-certificates-2019.2.32-76.el7_7.noarch: install failed >> 5 error: Couldn't fork %post(certbot-1.0.0-1.el7.noarch): Cannot >> allocate memory >> 6 error: Couldn't fork >> %pre(MariaDB-server-10.4.11-1.el7.centos.x86_64): Cannot allocate >> memory >> 7 error: MariaDB-server-10.4.11-1.el7.centos.x86_64: install failed >> 8 error: Couldn't fork %post(sssd-client-1.16.4-21.el7_7.1.x86_64): >> Cannot allocate memory >> 9 error: Couldn't fork >> %post(kernel-tools-3.10.0-1062.9.1.el7.x86_64): Cannot allocate >> memory >> 10 error: Couldn't fork %pre(php-pear-1:1.10.10-4.el7.remi.noarch): >> Cannot allocate memory >> 11 error: php-pear-1:1.10.10-4.el7.remi.noarch: install failed >> 12 warning: /etc/clamd.d/scan.conf created as >> /etc/clamd.d/scan.conf.rpmnew >> 13 error: Couldn't fork >> %triggerin(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate >> memory >> 14 error: php-pear-1:1.10.10-2.el7.remi.noarch: erase skipped >> 15 error: MariaDB-server-10.4.10-1.el7.centos.x86_64: erase skipped >> 16 error: Couldn't fork >> %preun(MariaDB-shared-10.4.10-1.el7.centos.x86_64): Cannot allocate >> memory >> 17 error: MariaDB-shared-10.4.10-1.el7.centos.x86_64: erase failed >> 18 error: Couldn't fork >> %postun(MariaDB-compat-10.4.10-1.el7.centos.x86_64): Cannot allocate >> memory >> 19 error: ca-certificates-2018.2.22-70.0.el7_5.noarch: erase skipped >> 20 error: Couldn't fork %preun(microcode_ctl-2:2.1-53.3.el7_7.x86_64): >> Cannot allocate memory >> 21 error: microcode_ctl-2:2.1-53.3.el7_7.x86_64: erase failed >> 22 error: Couldn't fork >> %preun(postgresql10-server-10.11-1PGDG.rhel7.x86_64): Cannot allocate >> memory >> 23 error: postgresql10-server-10.11-1PGDG.rhel7.x86_64: erase failed >> 24 error: Couldn't fork %postun(libmount-2.23.2-61.el7.x86_64): Cannot >> allocate memory >> 25 error: Couldn't fork %preun(sssd-client-1.16.4-21.el7.x86_64): >> Cannot allocate memory >> 26 error: sssd-client-1.16.4-21.el7.x86_64: erase failed >> 27 error: Couldn't fork %postun(libblkid-2.23.2-61.el7.x86_64): Cannot >> allocate memory >> 28 error: Couldn't fork >> %postun(postgresql10-10.11-1PGDG.rhel7.x86_64): Cannot allocate memory >> 29 error: Couldn't fork %postun(clamav-lib-0.101.4-1.el7.x86_64): >> Cannot allocate memory >> 30 error: Couldn't fork >> %postun(kernel-tools-3.10.0-1062.4.3.el7.x86_64): Cannot allocate >> memory >> 31 error: Couldn't fork %postun(libcurl-7.29.0-54.el7.x86_64): Cannot >> allocate memory >> 32 error: Couldn't fork %postun(nss-3.44.0-4.el7.x86_64): Cannot >> allocate memory >> 33 error: Couldn't fork %postun(nss-softokn-3.44.0-5.el7.x86_64): >> Cannot allocate memory >> 34 error: Couldn't fork %postun(nss-util-3.44.0-3.el7.x86_64): Cannot >> allocate memory >> 35 error: Couldn't fork >> %postun(postgresql10-libs-10.11-1PGDG.rhel7.x86_64): Cannot allocate >> memory >> 36 error: Couldn't fork %postun(libuuid-2.23.2-61.el7.x86_64): Cannot >> allocate memory >> 37 error: Couldn't fork %postun(libsss_idmap-1.16.4-21.el7.x86_64): >> Cannot allocate memory >> 38 error: Couldn't fork >> %postun(libsss_nss_idmap-1.16.4-21.el7.x86_64): Cannot allocate memory >> 39 error: Couldn't fork %postun(libsmartcols-2.23.2-61.el7.x86_64): >> Cannot allocate memory >> 40 error: Couldn't fork %postun(libwebp7-1.0.2-1.el7.remi.x86_64): >> Cannot allocate memory >> 41 error: Couldn't fork %postun(fribidi-1.0.2-1.el7.x86_64): Cannot >> allocate memory >> 42 error: Couldn't fork %preun(proftpd-1.3.5e-7.el7.x86_64): Cannot >> allocate memory >> 43 error: proftpd-1.3.5e-7.el7.x86_64: erase failed >> 44 error: Couldn't fork %postun(numactl-libs-2.0.12-3.el7.x86_64): >> Cannot allocate memory >> 45 error: Couldn't fork %posttrans(kernel-3.10.0-1062.9.1.el7.x86_64): >> Cannot allocate memory >> 46 error: Couldn't fork >> %posttrans(microcode_ctl-2:2.1-53.7.el7_7.x86_64): Cannot allocate >> memory >> history info >> [root at vps2 ~]# >> > > Before you try the update again, you'll have to fix the reason for the > failure - add memory, or at least add a swap file. > > You could check with > rpm -qa --last | head -20 > which the latest packages are that were installed. > > If the rpm database is corrupted, rebuild it with > rpm --rebuilddb > > You can reinstall packages that may not be completely installed, using > rpm --reinstall PACKAGE_FILEWell, there may be more to check and above steps may not help. Do you have duplicates in rpmdb? Which one of the duplicates are already on the filesystem? Regards, Simon
Gary Stainburn
2020-Jan-24 12:23 UTC
[CentOS] yum update / kernal update failed - remove or repair
On Thursday 23 January 2020 15:22:32 Simon Matter via CentOS wrote:> > > > Before you try the update again, you'll have to fix the reason for the > > failure - add memory, or at least add a swap file. > > > > You could check with > > rpm -qa --last | head -20 > > which the latest packages are that were installed. > > > > If the rpm database is corrupted, rebuild it with > > rpm --rebuilddb > > > > You can reinstall packages that may not be completely installed, using > > rpm --reinstall PACKAGE_FILE > > Well, there may be more to check and above steps may not help. > > Do you have duplicates in rpmdb? Which one of the duplicates are already > on the filesystem?I do not believe that I have any duplicate RPM's installed, and I do not believe that the database is actually wrong. I believe that it is purely that the installs did not complete successfully. I have managed to remove the latest kernel RPM and 'yum update kernel*' re-applied the update without errors. I am going to go through the list of failed RPM's and to a 'rpm --reinstall' for each one in turn and hopefully they will work too. Before doing that I will do as Kay suggested and find out why I had the memory problem in the first place.