The problem is that I am trying to run this R code :
https://github.com/dmalinsk/lv-ida/blob/master/example.R
?
So I run :
library(pcalg)
library(igraph)
library(RBGL)
source("lvida.R")
Here is what I get :
source("lvida.R")
Error in file(filename, "r", encoding = encoding) :
? cannot open the connection
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
? cannot open file 'lvida.R': No such file or directory
So, I guess the problem is coming from the source not from the libraries? How to
solve that problem?
Best,
Le samedi 22 avril 2023 ? 18:30:48 UTC+2, Eric Berger <ericjberger at
gmail.com> a ?crit :
looks fine.
what's the problem?
On Sat, Apr 22, 2023 at 7:27?PM varin sacha <varinsacha at yahoo.fr>
wrote:> Eric,
>
> Here it is :
>
>
> library(RBGL)
> Loading required package: graph
> Loading required package: BiocGenerics
>
> Attaching package: ?BiocGenerics?
>
> The following objects are masked from ?package:igraph?:
>
> ? normalize, path, union
>
> The following objects are masked from ?package:stats?:
>
> ? IQR, mad, sd, var, xtabs
>
> The following objects are masked from ?package:base?:
>
> ? anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl,
intersect, is.unsorted, lapply, Map,
> ? mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which.max,
> ? which.min
>
>
> Attaching package: ?graph?
>
> The following objects are masked from ?package:igraph?:
>
> ? degree, edges, intersection
>
>
> Attaching package: ?RBGL?
>
> The following objects are masked from ?package:igraph?:
>
> ? bfs, dfs, transitivity
>
>
>
>
>
>
>
>
>
>
> Le samedi 22 avril 2023 ? 18:12:56 UTC+2, Eric Berger <ericjberger at
gmail.com> a ?crit :
>
>
>
>
>
> What happens with the command
>> library(RBGL)
>
>
>
> On Sat, Apr 22, 2023 at 7:08?PM varin sacha via R-help <r-help at
r-project.org> wrote:
>> Dear R-experts,
>>
>> How to solve that problem?
>>
>> My R version is 4.2.1
>>
>> Here below trying to install RGBL library found here
:?https://bioconductor.org/packages/release/bioc/html/RBGL.html
>>
>> So, I run this R code :
>>
>> if (!require("BiocManager", quietly = TRUE))
>> ????install.packages("BiocManager")
>>
>> BiocManager::install("RBGL")
>>
>>
>> Here is what I get :
>>
>>> if (!require("BiocManager", quietly = TRUE))
>> + install.packages("BiocManager")
>> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
>>>
>>> BiocManager::install("RBGL")
>> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
>> Warning message:
>> package(s) not installed when version(s) same as or greater than
current; use `force = TRUE` to re-install: 'RBGL'
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>