abo dalash
2017-May-08 14:56 UTC
[R] Joining tables with different order and matched values
Hi All .., I have 2 tables and I'm trying to have some information from the 1st table to appear in the second table with different order. For Example, let's say this is my 1st table :- Drug name indications Ibuprofen Pain Simvastatin hyperlipidemia losartan hypertension my 2nd table is in different order for the 1st column :- Drug name indications Simvastatin losartan Ibuprofen Metformin I wish to see the indication of each drug in my 2nd table subsisted from the information in my 1st table so the final table would be like this Drug name indications Simvastatin hyperlipidemia losartan hypertension Ibuprofen pain Metformin N/A I have been trying to use Sqldf package and right join function but not able to formulate the correct syntax. I'm also trying to identify rows contain at least one shared value in a dataset called 'Values":>ValuesA B 1,2,5 3,8,7 2,4,6 7,6,3 Columns A & B in the first row do not share any value while in the 2nd row they have a single shared value which is 6. The result I wish to see :- A B shared values 1,2,5 3,8,7 N/A 2,4,6 7,6,3 6 I tried this syntax : SharedValues <- Values$A == Values$B but this returns logical results and what I wish to have is a new data frame including the new vector "shared values" showing the information exactly as above. Kind Regards [[alternative HTML version deleted]]
Ulrik Stervbo
2017-May-09 06:42 UTC
[R] Joining tables with different order and matched values
Hi Abo, ?merge or the join functions from dplyr. HTH Ulrik On Tue, 9 May 2017 at 06:44 abo dalash <abo_dlsh at hotmail.com> wrote:> Hi All .., > > > I have 2 tables and I'm trying to have some information from the 1st table > to appear in the second table with different order. > > > For Example, let's say this is my 1st table :- > > > > Drug name indications > > Ibuprofen Pain > > Simvastatin hyperlipidemia > > losartan hypertension > > > > my 2nd table is in different order for the 1st column :- > > > Drug name indications > > > Simvastatin > > losartan > > Ibuprofen > > Metformin > > > I wish to see the indication of each drug in my 2nd table subsisted from > the information in my 1st table so the final table > > would be like this > > > Drug name indications > > > Simvastatin hyperlipidemia > > losartan hypertension > > Ibuprofen pain > > Metformin N/A > > > I have been trying to use Sqldf package and right join function but not > able to formulate the correct syntax. > > > I'm also trying to identify rows contain at least one shared value in a > dataset called 'Values": > > > >Values > > A B > > 1,2,5 3,8,7 > > 2,4,6 7,6,3 > > > > Columns A & B in the first row do not share any value while in the 2nd row > they have a single shared value which is 6. > > The result I wish to see :- > > > A B shared values > > 1,2,5 3,8,7 N/A > > 2,4,6 7,6,3 6 > > > I tried this syntax : SharedValues <- Values$A == Values$B but this > returns logical results and what I wish to have > > is a new data frame including the new vector "shared values" showing the > information exactly as above. > > > > > Kind Regards > > > > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]
Ulrik Stervbo
2017-May-09 09:22 UTC
[R] Joining tables with different order and matched values
Hi Abo, Please keep the list in cc. I think the function documentation is pretty straight forward - two data.frames are required, and if you wish to keep elements that are not present in both data.frames, you set the flag all = TRUE. You also have the option to specify which columns to join by. If you need more assistance with joining two data.frames, you should provide a reproducible example, and if you have trouble with a function you should provide an example of what you have tried so far. Best wishes, Ulrik On Tue, 9 May 2017 at 10:00 abo dalash <abo_dlsh at hotmail.com> wrote:> Could you please teach me about the correct formation of the syntax?. I > have read the help page and other online resources about inner,left,&right > join but wasn't able to formulate the correct syntax. > > > Sent from my Samsung device > > > -------- Original message -------- > From: Ulrik Stervbo <ulrik.stervbo at gmail.com> > Date: 09/05/2017 7:42 a.m. (GMT+00:00) > To: abo dalash <abo_dlsh at hotmail.com>, "r-help at R-project.org" < > r-help at r-project.org> > Subject: Re: [R] Joining tables with different order and matched values > > Hi Abo, > > ?merge > > or the join functions from dplyr. > > HTH > Ulrik > > On Tue, 9 May 2017 at 06:44 abo dalash <abo_dlsh at hotmail.com> wrote: > >> Hi All .., >> >> >> I have 2 tables and I'm trying to have some information from the 1st >> table to appear in the second table with different order. >> >> >> For Example, let's say this is my 1st table :- >> >> >> >> Drug name indications >> >> Ibuprofen Pain >> >> Simvastatin hyperlipidemia >> >> losartan hypertension >> >> >> >> my 2nd table is in different order for the 1st column :- >> >> >> Drug name indications >> >> >> Simvastatin >> >> losartan >> >> Ibuprofen >> >> Metformin >> >> >> I wish to see the indication of each drug in my 2nd table subsisted from >> the information in my 1st table so the final table >> >> would be like this >> >> >> Drug name indications >> >> >> Simvastatin hyperlipidemia >> >> losartan hypertension >> >> Ibuprofen pain >> >> Metformin N/A >> >> >> I have been trying to use Sqldf package and right join function but not >> able to formulate the correct syntax. >> >> >> I'm also trying to identify rows contain at least one shared value in a >> dataset called 'Values": >> >> >> >Values >> >> A B >> >> 1,2,5 3,8,7 >> >> 2,4,6 7,6,3 >> >> >> >> Columns A & B in the first row do not share any value while in the 2nd >> row they have a single shared value which is 6. >> >> The result I wish to see :- >> >> >> A B shared values >> >> 1,2,5 3,8,7 N/A >> >> 2,4,6 7,6,3 6 >> >> >> I tried this syntax : SharedValues <- Values$A == Values$B but this >> returns logical results and what I wish to have >> >> is a new data frame including the new vector "shared values" showing the >> information exactly as above. >> >> >> >> >> Kind Regards >> >> >> >> >> >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> >[[alternative HTML version deleted]]
abo dalash
2017-May-09 17:21 UTC
[R] Joining tables with different order and matched values
I'm repeating my question and hope to find someone to help. I have been trying for hours but without results, I have done previous suggestions but still struggling. I believe that join functions in dplyr will do the work but I'm confusing with the correct syntax. I have 2 tables and I'm trying to have some information from the 1st table to appear in the 2nd table. let's say this is my 1st table :->df1Drug name indications Ibuprofen Pain Simvastatin hyperlipidemia losartan hypertension my 2nd table contains the same list of drugs under the first column BUT with different order :->df2Drug name indications Simvastatin losartan Ibuprofen Metformin Simply, I want to produce a table like df1 but in the order of the 1st column of my df2. This would be like this>joined tablesDrug name indications Simvastatin hyperlipidemia losartan hypertension Ibuprofen pain Metformin N/A Please note that it is important to keep the order of drugs in df2 as it and to see the appropriate indication of each drug(which is withdrawn from df1) next to it under "indications" column. ________________________________ From: Ulrik Stervbo <ulrik.stervbo at gmail.com> Sent: 09 May 2017 06:31 PM To: abo dalash Subject: Re: [R] Joining tables with different order and matched values Hi Abo, Please keep the list in cc - 1) the comments are accessible to everyone, 2) there is a chance that someone else might reply. If the merge does what you intend, but you are unhappy with the order, you can arrange the resulting data.frame: df <- data.frame(x = c(5, 4,2,3,6, 1), y = letters[1:6]) df df[order(df$x), ] HTH Ulrik On Tue, 9 May 2017 at 16:17 abo dalash <abo_dlsh at hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote: I still cannot produce the table I wish. I tried the following with the same results. A <-merge(dt1, dt2, by = "Drug name", all.x = TRUE) A <-join_query(dt1, dt2, by = "Drug name") This returns a table showing results with changing the order of drugs in the 2nd data frame. I want to see the results under "indications" column without changing the order of drugs in my 2nd data frame. I have been trying for many hours, so please help me to know what is the mistake I have done and what is the correct syntax. Regards ________________________________ From: Ulrik Stervbo <ulrik.stervbo at gmail.com<mailto:ulrik.stervbo at gmail.com>> Sent: 09 May 2017 12:22 PM To: abo dalash; R-help Subject: Re: [R] Joining tables with different order and matched values Hi Abo, Please keep the list in cc. I think the function documentation is pretty straight forward - two data.frames are required, and if you wish to keep elements that are not present in both data.frames, you set the flag all = TRUE. You also have the option to specify which columns to join by. If you need more assistance with joining two data.frames, you should provide a reproducible example, and if you have trouble with a function you should provide an example of what you have tried so far. Best wishes, Ulrik On Tue, 9 May 2017 at 10:00 abo dalash <abo_dlsh at hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote: Could you please teach me about the correct formation of the syntax?. I hav n but wasn't able to formulate the correct syntax. Sent from my Samsung device -------- Original message -------- From: Ulrik Stervbo <ulrik.stervbo at gmail.com<mailto:ulrik.stervbo at gmail.com>> Date: 09/05/2017 7:42 a.m. (GMT+00:00) To: abo dalash <abo_dlsh at hotmail.com<mailto:abo_dlsh at hotmail.com>>, "r-help at R-project.org" <r-help at r-project.org<mailto:r-help at r-project.org>> Subject: Re: [R] Joining tables with different order and matched values Hi Abo, ?merge or the join functions from dplyr. HTH Ulrik On Tue, 9 May 2017 at 06:44 abo dalash <abo_dlsh at hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote: Hi All .., I have 2 tables and I'm trying to have some information from the 1st table to appear in the second table with different order. For Example, let's say this is my 1st table :- Drug name indications Ibuprofen Pain Simvastatin hyperlipidemia losartan hypertension my 2nd table is in different order for the 1st column :- Drug name indications Simvastatin losartan Ibuprofen Metformin I wish to see the indication of each drug in my 2nd table subsisted from the information in my 1st table so the final table would be like this Drug name indications Simvastatin hyperlipidemia losartan hypertension Ibuprofen pain Metformin N/A I have been trying to use Sqldf package and right join function but not able to formulate the correct syntax. I'm also trying to identify rows contain at least one shared value in a dataset called 'Values":>ValuesA B 1,2,5 3,8,7 2,4,6 7,6,3 Columns A & B in the first row do not share any value while in the 2nd row they have a single shared value which is 6. The result I wish to see :- A B shared values 1,2,5 3,8,7 N/A 2,4,6 7,6,3 6 I tried this syntax : SharedValues <- Values$A == Values$B but this returns logical results and what I wish to have is a new data frame including the new vector "shared values" showing the information exactly as above. Kind Regards [[alternative HTML version deleted]] ______________________________________________ R-help at r-project.org<mailto:R-help at r-project.org> mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]]
Boris Steipe
2017-May-09 19:33 UTC
[R] Joining tables with different order and matched values
myDf1 <- data.frame(drugs = c("Ibuprofen", "Simvastatin",
"Losartan"),
indications = c("pain",
"hyperlipidemia", "hypertension"),
stringsAsFactors = FALSE)
myDf2 <- data.frame(drugs = c("Simvastatin", "Losartan",
"Ibuprofen", "Metformin"),
stringsAsFactors = FALSE)
myDf3 <- merge(myDf2, myDf1, all = TRUE, sort = FALSE)
R > myDf3
drugs indications
1 Simvastatin hyperlipidemia
2 Losartan hypertension
3 Ibuprofen pain
4 Metformin <NA>
R > str(myDf3)
'data.frame': 4 obs. of 2 variables:
$ drugs : chr "Simvastatin" "Losartan"
"Ibuprofen" "Metformin"
$ indications: chr "hyperlipidemia" "hypertension"
"pain" NA
-----
Minimum working example!
Don't post in HTML!
... you should know better by now.
> On May 9, 2017, at 1:21 PM, abo dalash <abo_dlsh at hotmail.com>
wrote:
>
> I'm repeating my question and hope to find someone to help.
>
>
> I have been trying for hours but without results, I have done previous
suggestions but still struggling.
>
>
> I believe that join functions in dplyr will do the work but I'm
confusing with the correct syntax.
>
>
> I have 2 tables and I'm trying to have some information from the 1st
table to appear in the 2nd table.
>
>
> let's say this is my 1st table :-
>
>
>> df1
> Drug name indications
>
> Ibuprofen Pain
>
> Simvastatin hyperlipidemia
>
> losartan hypertension
>
>
>
> my 2nd table contains the same list of drugs under the first column BUT
with different order :-
>
>> df2
> Drug name indications
>
>
> Simvastatin
>
> losartan
>
> Ibuprofen
>
> Metformin
>
> Simply, I want to produce a table like df1 but in the order of the 1st
column of my df2.
>
> This would be like this
>
>> joined tables
> Drug name indications
>
>
> Simvastatin hyperlipidemia
>
> losartan hypertension
>
> Ibuprofen pain
>
> Metformin N/A
>
>
> Please note that it is important to keep the order of drugs in df2 as it
and to see the appropriate indication of each drug(which is withdrawn from df1)
next to it under "indications" column.
>
>
>
> ________________________________
> From: Ulrik Stervbo <ulrik.stervbo at gmail.com>
> Sent: 09 May 2017 06:31 PM
> To: abo dalash
> Subject: Re: [R] Joining tables with different order and matched values
>
> Hi Abo,
>
> Please keep the list in cc - 1) the comments are accessible to everyone, 2)
there is a chance that someone else might reply.
>
> If the merge does what you intend, but you are unhappy with the order, you
can arrange the resulting data.frame:
>
> df <- data.frame(x = c(5, 4,2,3,6, 1), y = letters[1:6])
>
> df
> df[order(df$x), ]
>
> HTH
> Ulrik
>
>
>
> On Tue, 9 May 2017 at 16:17 abo dalash <abo_dlsh at
hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote:
>
>
> I still cannot produce the table I wish. I tried the following with the
same results.
>
>
> A <-merge(dt1, dt2, by = "Drug name", all.x = TRUE)
>
>
> A <-join_query(dt1, dt2, by = "Drug name")
>
> This returns a table showing results with changing the order of drugs in
the 2nd data frame. I want to see the results under
> "indications" column without changing the order of drugs in my
2nd data frame. I have been trying for many hours, so please
> help me to know what is the mistake I have done and what is the correct
syntax.
>
>
> Regards
> ________________________________
> From: Ulrik Stervbo <ulrik.stervbo at gmail.com<mailto:ulrik.stervbo
at gmail.com>>
> Sent: 09 May 2017 12:22 PM
> To: abo dalash; R-help
>
> Subject: Re: [R] Joining tables with different order and matched values
> Hi Abo,
>
> Please keep the list in cc.
>
> I think the function documentation is pretty straight forward - two
data.frames are required, and if you wish to keep elements that are not present
in both data.frames, you set the flag all = TRUE. You also have the option to
specify which columns to join by.
>
> If you need more assistance with joining two data.frames, you should
provide a reproducible example, and if you have trouble with a function you
should provide an example of what you have tried so far.
>
> Best wishes,
> Ulrik
>
>
>
> On Tue, 9 May 2017 at 10:00 abo dalash <abo_dlsh at
hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote:
> Could you please teach me about the correct formation of the syntax?. I hav
> n but wasn't able to formulate the correct syntax.
>
>
> Sent from my Samsung device
>
>
> -------- Original message --------
> From: Ulrik Stervbo <ulrik.stervbo at gmail.com<mailto:ulrik.stervbo
at gmail.com>>
> Date: 09/05/2017 7:42 a.m. (GMT+00:00)
> To: abo dalash <abo_dlsh at hotmail.com<mailto:abo_dlsh at
hotmail.com>>, "r-help at R-project.org" <r-help at
r-project.org<mailto:r-help at r-project.org>>
> Subject: Re: [R] Joining tables with different order and matched values
>
> Hi Abo,
>
> ?merge
>
> or the join functions from dplyr.
>
> HTH
> Ulrik
>
> On Tue, 9 May 2017 at 06:44 abo dalash <abo_dlsh at
hotmail.com<mailto:abo_dlsh at hotmail.com>> wrote:
> Hi All ..,
>
>
> I have 2 tables and I'm trying to have some information from the 1st
table to appear in the second table with different order.
>
>
> For Example, let's say this is my 1st table :-
>
>
>
> Drug name indications
>
> Ibuprofen Pain
>
> Simvastatin hyperlipidemia
>
> losartan hypertension
>
>
>
> my 2nd table is in different order for the 1st column :-
>
>
> Drug name indications
>
>
> Simvastatin
>
> losartan
>
> Ibuprofen
>
> Metformin
>
>
> I wish to see the indication of each drug in my 2nd table subsisted from
the information in my 1st table so the final table
>
> would be like this
>
>
> Drug name indications
>
>
> Simvastatin hyperlipidemia
>
> losartan hypertension
>
> Ibuprofen pain
>
> Metformin N/A
>
>
> I have been trying to use Sqldf package and right join function but not
able to formulate the correct syntax.
>
>
> I'm also trying to identify rows contain at least one shared value in
a dataset called 'Values":
>
>
>> Values
>
> A B
>
> 1,2,5 3,8,7
>
> 2,4,6 7,6,3
>
>
>
> Columns A & B in the first row do not share any value while in the 2nd
row they have a single shared value which is 6.
>
> The result I wish to see :-
>
>
> A B shared values
>
> 1,2,5 3,8,7 N/A
>
> 2,4,6 7,6,3 6
>
>
> I tried this syntax : SharedValues <- Values$A == Values$B but this
returns logical results and what I wish to have
>
> is a new data frame including the new vector "shared values"
showing the information exactly as above.
>
>
>
>
> Kind Regards
>
>
>
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org<mailto:R-help at r-project.org> mailing list
-- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
jim holtman
2017-May-14 14:04 UTC
[R] Joining tables with different order and matched values
Here is a solution to the "shared values" question> library(stringr) > input <- read.table(text = "A B+ + 1,2,5 3,8,7 + + 2,4,6 7,6,3 ", + header = TRUE, + as.is = TRUE + )> > input$'shared values' <- apply(input, 1, function(x){+ toString(intersect(str_extract_all(x[1], "[^,]")[[1]], + str_extract_all(x[2], "[^,]")[[1]] + )) + })> > inputA B shared values 1 1,2,5 3,8,7 2 2,4,6 7,6,3 6 Jim Holtman Data Munger Guru What is the problem that you are trying to solve? Tell me what you want to do, not how you want to do it. On Mon, May 8, 2017 at 10:56 AM, abo dalash <abo_dlsh at hotmail.com> wrote:> Hi All .., > > > I have 2 tables and I'm trying to have some information from the 1st table > to appear in the second table with different order. > > > For Example, let's say this is my 1st table :- > > > > Drug name indications > > Ibuprofen Pain > > Simvastatin hyperlipidemia > > losartan hypertension > > > > my 2nd table is in different order for the 1st column :- > > > Drug name indications > > > Simvastatin > > losartan > > Ibuprofen > > Metformin > > > I wish to see the indication of each drug in my 2nd table subsisted from > the information in my 1st table so the final table > > would be like this > > > Drug name indications > > > Simvastatin hyperlipidemia > > losartan hypertension > > Ibuprofen pain > > Metformin N/A > > > I have been trying to use Sqldf package and right join function but not > able to formulate the correct syntax. > > > I'm also trying to identify rows contain at least one shared value in a > dataset called 'Values": > > > >Values > > A B > > 1,2,5 3,8,7 > > 2,4,6 7,6,3 > > > > Columns A & B in the first row do not share any value while in the 2nd row > they have a single shared value which is 6. > > The result I wish to see :- > > > A B shared values > > 1,2,5 3,8,7 N/A > > 2,4,6 7,6,3 6 > > > I tried this syntax : SharedValues <- Values$A == Values$B but this > returns logical results and what I wish to have > > is a new data frame including the new vector "shared values" showing the > information exactly as above. > > > > > Kind Regards > > > > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]