Rathore, Saubhagya Singh
2017-Feb-15 17:36 UTC
[R] R version 3.3.2, Windows 10 -- gstat.predict() function often return NaN values (GSTAT Package)
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Rathore, Saubhagya Singh
2017-Feb-16 19:40 UTC
[R] R version 3.3.2, Windows 10 -- gstat.predict() function often return NaN values (GSTAT Package)
I am adding my message in the mail body as I found it missing from the mail that finally got posted on the list. I am trying to simulate a combination of two different random fields (yy1 and yy2 different mean and correlation length) with an irregular boundary. I have attached the picture of my expected outcome. The code is not giving such output consistently and I am frequently getting atleast one of the yy1 and yy2 as as NaN, which results in the Undesired output as shown in image. The key steps I used are: 1) Created two gsat objects with different means and psill (rf1 and rf2) 2) Created two computational grids (one for each random field) in the form of data frame with two variables "x" and "y" coordinates. 3) Predicted two random fields using unconditional simulation. The code is fairly small hence I am pasting in here itself. Any help in this regard would be highly appreciated. ## Code starts ==================================================================================library(gstat) xy <- expand.grid(1:150, 1:200) # grid is created in the form of a dataframe with x and y vectors names(xy)<-c('x','y') # giving names to the variables # Creating gsat objects rf1<-gstat(formula=z~1,locations=~x+y,dummy = T,beta=c(1,0,0), model=vgm(psill=0.025, range=5, model='Exp'), nmax=20) # dummy=T treats this as a unditional simulation rf2<-gstat(formula=z~1,locations=~x+y,dummy = T,beta=c(4,0,0), model=vgm(psill=0.025, range=10, model='Exp'), nmax=20) # dummy=T treats this as a unditional simulation # Splitting the computational grid into two rows<-nrow(xy) xy_shift <- expand.grid(60:90, 75:100) names(xy_shift)<-c('x','y') library(dplyr) # for antijoin xy1<-xy[1:(rows/2),] xy1<-anti_join(xy1, xy_shift, by = c("x","y")) # creating the irregular boundary xy2<-rbind(xy[(rows/2+1):rows,],xy_shift) # Simulation yy1<- predict(rf1, newdata=xy1, nsim=1) # random field 1 yy2<- predict(rf2, newdata=xy2, nsim=1) # random field 2 yy<-rbind(yy1,yy2) # Plotting the field library(sp) gridded(yy) = ~x+y spplot(obj=yy[1]) ## Code ends==================================================================== -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Rathore, Saubhagya Singh Sent: Wednesday, February 15, 2017 12:37 PM To: r-help at r-project.org Subject: [R] R version 3.3.2, Windows 10 -- gstat.predict() function often return NaN values (GSTAT Package) ______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -------------- next part -------------- A non-text attachment was scrubbed... Name: Expected Output.png Type: image/png Size: 10081 bytes Desc: Expected Output.png URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20170216/5fb8244d/attachment.png> -------------- next part -------------- A non-text attachment was scrubbed... Name: Undesired Output.png Type: image/png Size: 7668 bytes Desc: Undesired Output.png URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20170216/5fb8244d/attachment-0001.png>