This is entirely within your OS's installation of Tcl/Tk and X11: the
latter both allocated and freed. We've seen it before (even had it as
bug report on R). Please check your OS is fully up-to-date and if so
report it there.
On 01/07/2019 15:55, Therneau, Terry M., Ph.D. via R-devel
wrote:> I have an ASAN enabled version of R-devel on my test machine, and can get
it to relably
> crash.? Here is the first part of the session:
>
> tmt-local2434% R --vanilla
>
> R Under development (unstable) (2019-06-28 r76752) -- "Unsuffered
Consequences"
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>
> ? Natural language support but running in an English locale
>
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> > install.packages('kinship2')
> Installing package into ?/home/therneau/Rlib?
> (as ?lib? is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> ================================================================>
==21606==ERROR: AddressSanitizer: heap-use-after-free on address 0x602000042830
at pc
> 0x7f9f834fa0f7 bp 0x7fff24ab9050 sp 0x7fff24ab87f8
> READ of size 1 at 0x602000042830 thread T0
> ??? #0 0x7f9f834fa0f6 (/usr/lib/x86_64-linux-gnu/libasan.so.4+0x5a0f6)
> ??? #1 0x7f787837d683 in _XimUnRegisterIMInstantiateCallback
> (/usr/lib/x86_64-linux-gnu/libX11.so.6+0x64683)
> ??? #2 0x7f7878364d32 in XUnregisterIMInstantiateCallback
> (/usr/lib/x86_64-linux-gnu/libX11.so.6+0x4bd32)
> ??? #3 0x7f787837d566 in _XimRegisterIMInstantiateCallback
> (/usr/lib/x86_64-linux-gnu/libX11.so.6+0x64566)
> ??? #4 0x7f7878364cba in XRegisterIMInstantiateCallback
> (/usr/lib/x86_64-linux-gnu/libX11.so.6+0x4bcba)
> ??? #5 0x7f78745cddfb in TkpOpenDisplay
(/usr/lib/x86_64-linux-gnu/libtk8.6.so+0xf2dfb)
> ??? #6 0x7f787453c769 (/usr/lib/x86_64-linux-gnu/libtk8.6.so+0x61769)
> ??? #7 0x7f787453d0ab in TkCreateMainWindow
(/usr/lib/x86_64-linux-gnu/libtk8.6.so+0x620ab)
> ??? #8 0x7f7874548cc6 (/usr/lib/x86_64-linux-gnu/libtk8.6.so+0x6dcc6)
> ??? #9 0x7f7874546c7a (/usr/lib/x86_64-linux-gnu/libtk8.6.so+0x6bc7a)
> ??? #10 0x7f787453f6c4 (/usr/lib/x86_64-linux-gnu/libtk8.6.so+0x646c4)
> ??? #11 0x7f7874bf0c0b in tcltk_init
/usr/local/src/R-devel/src/library/tcltk/src/tcltk.c:697
> ??? #12 0x5582e3aa93c1 in do_dotCode
/usr/local/src/R-devel/src/main/dotcode.c:1743
> ??? #13 0x5582e3b41f79 in bcEval
/usr/local/src/R-devel/src/main/eval.c:6775
> ??? #14 0x5582e3b6a5df in Rf_eval
/usr/local/src/R-devel/src/main/eval.c:620
> ??? #15 0x5582e3b702b9 in R_execClosure
/usr/local/src/R-devel/src/main/eval.c:1780
> ??? #16 0x5582e3b72777 in Rf_applyClosure
/usr/local/src/R-devel/src/main/eval.c:1706
> ??? #17 0x5582e3b4ab0a in bcEval
/usr/local/src/R-devel/src/main/eval.c:6743
> ??? #18 0x5582e3b6a5df in Rf_eval
/usr/local/src/R-devel/src/main/eval.c:620
> ??? #19 0x5582e3b6c55e in forcePromise
/usr/local/src/R-devel/src/main/eval.c:516
> ??? #20 0x5582e3b6d22f in FORCE_PROMISE
/usr/local/src/R-devel/src/main/eval.c:4900
> ?...
> ??? #133 0x7f788f5e6b96 in __libc_start_main
(/lib/x86_64-linux-gnu/libc.so.6+0x21b96)
> ??? #134 0x5582e392b999 in _start
(/usr/local/src/R-devel/bin/exec/R+0x135999)
>
> 0x602000055af0 is located 0 bytes inside of 1-byte region
[0x602000055af0,0x602000055af1)
> freed by thread T0 here:
> ??? #0 0x7f7891a157b8 in __interceptor_free
(/usr/lib/x86_64-linux-gnu/libasan.so.4+0xde7b8)
> ??? #1 0x7f7878373d8c in XSetLocaleModifiers
(/usr/lib/x86_64-linux-gnu/libX11.so.6+0x5ad8c)
>
> previously allocated by thread T0 here:
> ??? #0 0x7f7891a15b50 in __interceptor_malloc
> (/usr/lib/x86_64-linux-gnu/libasan.so.4+0xdeb50)
> ??? #1 0x7f7878373984 in _XlcDefaultMapModifiers
> (/usr/lib/x86_64-linux-gnu/libX11.so.6+0x5a984)
>
> SUMMARY: AddressSanitizer: heap-use-after-free
> (/usr/lib/x86_64-linux-gnu/libasan.so.4+0x5a0f6)
>
> ------------------------------
> The window with a choice of machines never appeared.
>
> Terry T.
>
>
>
>
> [[alternative HTML version deleted]]
>
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>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford