Kjetil brinchmann Halvorsen
2019-Apr-08 12:19 UTC
[R-sig-Debian] debian testing: Problems with R function vignette()
Hola! I am on debian testing, all updates up to date. I am running R via emacs and ess, so I canot know if this is an R or emacs/ess problem. What happens is that I want to read an vignette, and calls something like vignette("mle2", package="bbmle") the pdf file opens (for me in Foxit reader), no problem, but then emacs starts to spew a lot of spam, interfering with the use of ess/R. A small sample: ScheduleTimerQuery called GetDntDataTotal sql exec success GetDntDataQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success ScheduleTimerQuery called GetDntDataTotal sql exec success GetDntDataQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success ScheduleTimerQuery called GetDntDataTotal sql exec success GetDntDataQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success ScheduleTimerQuery called GetDntDataTotal sql exec success GetDntDataQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success SchedulePriorTracktype called GetDntDataPriorQueue sql exec success ScheduleTimerQuery called GetDntDataTotal sql exec success GetDntDataQueue sql exec success SchedulePriorTracktype called .... continuing like that without stop. To get a prompt I have to send (from emacs "Signals" menu) the EOF signal, and then choosing "cancel". Then I can continue issuing commands, which get interrupted by the noise above ... What is happening? Now I try the same with R running in a Mate terminal, lets see what happens: vignette("mle2", package="bbmle")> [TimeStamp]-----main-----beginsendMessage Well, ... nothing happens---no problems & no pdf! Thanks, Kjetil This is the output of sessionInfo() at start of session: sessionInfo() R version 3.5.2 (2018-12-20) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux buster/sid Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] MASS_7.3-51.3 loaded via a namespace (and not attached): [1] compiler_3.5.2 fortunes_1.5-4 [[alternative HTML version deleted]]
Dirk Eddelbuettel
2019-Apr-18 10:29 UTC
[R-sig-Debian] debian testing: Problems with R function vignette()
On 8 April 2019 at 14:19, Kjetil brinchmann Halvorsen wrote: | Hola! | | I am on debian testing, all updates up to date. I am running R via emacs | and ess, so I canot know if this is an R or emacs/ess problem. What So separate it out. Do it outside emacs, if it persists report to the ESS list. Dirk | happens is that I want to read an vignette, and calls something like | vignette("mle2", package="bbmle") | | the pdf file opens (for me in Foxit reader), no problem, but then emacs | starts to spew a lot of spam, interfering with the use of ess/R. A small | sample: | | ScheduleTimerQuery called | GetDntDataTotal sql exec success | GetDntDataQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | ScheduleTimerQuery called | GetDntDataTotal sql exec success | GetDntDataQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | ScheduleTimerQuery called | GetDntDataTotal sql exec success | GetDntDataQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | ScheduleTimerQuery called | GetDntDataTotal sql exec success | GetDntDataQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | SchedulePriorTracktype called | GetDntDataPriorQueue sql exec success | ScheduleTimerQuery called | GetDntDataTotal sql exec success | GetDntDataQueue sql exec success | SchedulePriorTracktype called | | .... continuing like that without stop. To get a prompt I have to send | (from emacs "Signals" menu) the EOF signal, and then choosing "cancel". | Then I can continue issuing commands, which get interrupted by the noise | above ... What is happening? | | Now I try the same with R running in a Mate terminal, lets see what happens: | vignette("mle2", package="bbmle") | > [TimeStamp]-----main-----begin | sendMessage | | Well, ... nothing happens---no problems & no pdf! | | Thanks, | Kjetil | This is the output of sessionInfo() at start of session: | sessionInfo() | R version 3.5.2 (2018-12-20) | Platform: x86_64-pc-linux-gnu (64-bit) | Running under: Debian GNU/Linux buster/sid | | Matrix products: default | BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 | LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so | | locale: | [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C | [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 | [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 | [7] LC_PAPER=en_US.UTF-8 LC_NAME=C | [9] LC_ADDRESS=C LC_TELEPHONE=C | [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C | | attached base packages: | [1] stats graphics grDevices utils datasets methods base | | other attached packages: | [1] MASS_7.3-51.3 | | loaded via a namespace (and not attached): | [1] compiler_3.5.2 fortunes_1.5-4 | | [[alternative HTML version deleted]] | | _______________________________________________ | R-SIG-Debian mailing list | R-SIG-Debian at r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org