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Weiner, Michael

2017-Jan-12 12:29 UTC

[R-sig-Fedora] rgl

----Original Message-----
From: Martyn Plummer [mailto:plummerm at iarc.fr] 
Sent: Thursday, January 12, 2017 3:36 AM
To: Weiner, Michael <weinerm at ccf.org>; r-sig-fedora at r-project.org
Subject: Re: [R-sig-Fedora] rgl
>One possibility is that you have the 32-bit version of mesa-libGL-devel
installed. This will provide the headers but not the 64-bit l>ibrary which is
what you need (I can see this from the compiler flag -m64).
>
>If that is not the problem then you need to look at the configure log.
>The log is normally erased, but you can preserve it by unpacking the source
tarball and building from the resulting directory on the >command
>line:
>
>tar xfvz rgl_0.97.0.tar.gz
>R CMD INSTALL rgl
>
>Then open the file 'rgl/config.log' with your favourite editor and
search for "glEnd".
I actually had both on the system, removed the 32-bit version and reinstalled
the 64-bit version but I am seeing only this in the config.log:

configure:4429: checking for glEnd in -lGL
configure:4454: gcc -o conftest -g -O2  -DHAVE_PNG_H -I/usr/include/libpng16 
conftest.c -lGL   -L/usr/lib64 -lpng16 -lX11 >&5
/usr/bin/ld: cannot find -lGL
collect2: error: ld returned 1 exit status
configure:4454: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define HAVE_VISIBILITY_ATTRIBUTE 1
| #define HAVE_GL_GL_H 1
| #define HAVE_GL_GLU_H 1
| /* end confdefs.h.  */

==================================

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Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News
& World Report (2015).
Visit us online at http://www.clevelandclinic.org for a complete listing of our
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Martyn Plummer

2017-Jan-12 12:40 UTC

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[R-sig-Fedora] rgl

On Thu, 2017-01-12 at 12:29 +0000, Weiner, Michael
wrote:> ----Original Message-----
> From: Martyn Plummer [mailto:plummerm at iarc.fr]?
> Sent: Thursday, January 12, 2017 3:36 AM
> To: Weiner, Michael <weinerm at ccf.org>; r-sig-fedora at
r-project.org
> Subject: Re: [R-sig-Fedora] rgl
> 
> > 
> > One possibility is that you have the 32-bit version of
mesa-libGL-devel installed. This will provide the headers but not the 64-bit
l>ibrary which is what you need (I can see this from the compiler flag -m64).
> > 
> > If that is not the problem then you need to look at the configure log.
> > The log is normally erased, but you can preserve it by unpacking the
source tarball and building from the resulting directory on the >command
> > line:
> > 
> > tar xfvz rgl_0.97.0.tar.gz
> > R CMD INSTALL rgl
> > 
> > Then open the file 'rgl/config.log' with your favourite editor
and
> > search for "glEnd".
> 
> I actually had both on the system, removed the 32-bit version and
> reinstalled the 64-bit version but I am seeing only this in the
> config.log:
> 
> configure:4429: checking for glEnd in -lGL
> configure:4454: gcc -o conftest -g -O2??-DHAVE_PNG_H
> -I/usr/include/libpng16??conftest.c -lGL???-L/usr/lib64 -lpng16 -lX11
> >&5
> /usr/bin/ld: cannot find -lGL
Well that is odd. It means that the linker cannot find libGL even
though it is installed on the system. Try?

/sbin/ldconfig -p | grep libGL.so

You should see something like this.

[martyn at braque-iarc-lan minutes]$ /sbin/ldconfig -p | grep libGL.so
	libGL.so.1 (libc6,x86-64) => /lib64/libGL.so.1
	libGL.so.1 (libc6) => /lib/libGL.so.1
	libGL.so (libc6,x86-64) => /lib64/libGL.so

If you don't see the entry pointing to /lib64/libGL.so then type

sudo /sbin/ldconfig

and try again.

Martyn
> collect2: error: ld returned 1 exit status
> configure:4454: $? = 1
> configure: failed program was:
> > 
> > /* confdefs.h */
> > #define PACKAGE_NAME ""
> > #define PACKAGE_TARNAME ""
> > #define PACKAGE_VERSION ""
> > #define PACKAGE_STRING ""
> > #define PACKAGE_BUGREPORT ""
> > #define PACKAGE_URL ""
> > #define HAVE_VISIBILITY_ATTRIBUTE 1
> > #define HAVE_GL_GL_H 1
> > #define HAVE_GL_GLU_H 1
> > /* end confdefs.h.??*/
> 
> ==================================> 
> 
> ?Please consider the environment before printing this e-mail
> 
> Cleveland Clinic is ranked as one of the top hospitals in America by
> U.S.News & World Report (2015).??
> Visit us online at http://www.clevelandclinic.org for a complete
> listing of our services, staff and locations.
> 
> 
> Confidentiality Note:??This message is intended for use
> ...{{dropped:18}}
> 
> _______________________________________________
> R-SIG-Fedora mailing list
> R-SIG-Fedora at r-project.org
>
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Weiner, Michael

2017-Jan-12 12:45 UTC

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[R-sig-Fedora] rgl

-----Original Message-----
From: Martyn Plummer [mailto:plummerm at iarc.fr] 
Sent: Thursday, January 12, 2017 7:41 AM
To: Weiner, Michael <weinerm at ccf.org>; r-sig-fedora at r-project.org
Subject: Re: [R-sig-Fedora] rgl
>> configure:4429: checking for glEnd in -lGL
>> configure:4454: gcc -o conftest -g -O2??-DHAVE_PNG_H
>> -I/usr/include/libpng16??conftest.c -lGL???-L/usr/lib64 -lpng16 -lX11
>> >&5
>> /usr/bin/ld: cannot find -lGL
>
>Well that is odd. It means that the linker cannot find libGL even though it
is installed on the system. Try?
>
>/sbin/ldconfig -p | grep libGL.so
>
>You should see something like this.
>
>[martyn at braque-iarc-lan minutes]$ /sbin/ldconfig -p | grep libGL.so
>	libGL.so.1 (libc6,x86-64) => /lib64/libGL.so.1
>	libGL.so.1 (libc6) => /lib/libGL.so.1
>	libGL.so (libc6,x86-64) => /lib64/libGL.so
Odd:

[root at lri-105689 rgl]# /sbin/ldconfig -p | grep libGL.so
        libGL.so.1 (libc6,x86-64) => /lib64/libGL.so.1
        libGL.so.1 (libc6) => /lib/libGL.so.1
        libGL.so (libc6) => /lib/libGL.so

==================================

 Please consider the environment before printing this e-mail

Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News
& World Report (2015).
Visit us online at http://www.clevelandclinic.org for a complete listing of our
services, staff and locations.


Confidentiality Note:  This message is intended for use ...{{dropped:18}}

Weiner, Michael

2017-Jan-12 13:01 UTC

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[R-sig-Fedora] rgl

-----Original Message-----
From: Weiner, Michael 
Sent: Thursday, January 12, 2017 7:46 AM
To: r-sig-fedora at r-project.org
Subject: RE: [R-sig-Fedora] rgl

-----Original Message-----
From: Martyn Plummer [mailto:plummerm at iarc.fr] 
Sent: Thursday, January 12, 2017 7:41 AM
To: Weiner, Michael <weinerm at ccf.org>; r-sig-fedora at r-project.org
Subject: Re: [R-sig-Fedora] rgl
>> configure:4429: checking for glEnd in -lGL
>> configure:4454: gcc -o conftest -g -O2??-DHAVE_PNG_H
>> -I/usr/include/libpng16??conftest.c -lGL???-L/usr/lib64 -lpng16 -lX11
>> >&5
>> /usr/bin/ld: cannot find -lGL
>
>Well that is odd. It means that the linker cannot find libGL even though it
is installed on the system. Try?
>
>/sbin/ldconfig -p | grep libGL.so
>
>You should see something like this.
>
>[martyn at braque-iarc-lan minutes]$ /sbin/ldconfig -p | grep libGL.so
>	libGL.so.1 (libc6,x86-64) => /lib64/libGL.so.1
>	libGL.so.1 (libc6) => /lib/libGL.so.1
>	libGL.so (libc6,x86-64) => /lib64/libGL.so
Odd:

[root at lri-105689 rgl]# /sbin/ldconfig -p | grep libGL.so
        libGL.so.1 (libc6,x86-64) => /lib64/libGL.so.1
        libGL.so.1 (libc6) => /lib/libGL.so.1
        libGL.so (libc6) => /lib/libGL.so

I resolved this by reinstalling mesa-libGL (dnf reinstall libGL) seems
/lib64/libGL.so.1.2.0 was missing off the disk.

Thank you!

==================================

 Please consider the environment before printing this e-mail

Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News
& World Report (2015).
Visit us online at http://www.clevelandclinic.org for a complete listing of our
services, staff and locations.


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