I am testing most of the models caret supports on a bunch of PCs. Unfortunately caret "suggested" packages do not include most of the model packages available to caret. Every time a new version of R comes out I have to sit in front of each PC and wait for each prompt to press the 1 button and Enter. Is there an option I could set to tell R or Rstudio to just install anything asked for? A for every a/s/n prompt too. [[alternative HTML version deleted]]
?install.packages and pay attention to the "dependencies" argument. Th RStudio interface does not appear to allow for "suggests" packages (correction appreciated if this is wrong) , which the command line makes available. HTH. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Jul 31, 2017 at 5:07 AM, Dimlak Gorkehgz <rain8dome9 at gmail.com> wrote:> I am testing most of the models caret supports on a bunch of PCs. > Unfortunately caret "suggested" packages do not include most of the model > packages available to caret. Every time a new version of R comes out I have > to sit in front of each PC and wait for each prompt to press the 1 button > and Enter. Is there an option I could set to tell R or Rstudio to just > install anything asked for? A for every a/s/n prompt too. > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
You are right, maintainer does keep a list of model's packages. So how do I use a variable instead of $adaboost$? getModelInfo()$adaboost$library Also, server not found: http://rwiki.sciviews.org/doku.php?id=getting-started:reference-cards:getting-help On Tue, Aug 1, 2017 at 11:46 AM, Bert Gunter <bgunter.4567 at gmail.com> wrote:> I have provided you all the "advice" I can. Sorry it didn't help. You > should re-post your responses to me to r-help so that others might > help. you might also email the maintainer, found via the maintainer() > function, who may not monitor the list. > > Cheers, > Bert > Bert Gunter > > "The trouble with having an open mind is that people keep coming along > and sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > On Mon, Jul 31, 2017 at 9:38 PM, Dimlak Gorkehgz <rain8dome9 at gmail.com> > wrote: > > tools::package_dependencies(packs, available.packages(), > > + which=c("Imports", > "LinkingTo","Enhances"), # > > + recursive=T) > > > > > > > > (and suggests, and imports, and everything) does not include most > packages > > needed by every model. Recursive everything downloads most of all > packages > > available of CRAN. And then some necessary packages are not available and > > every pass through brings up a prompt for them. > > > > > > > > > > On Tue, Aug 1, 2017 at 11:12 AM, Dimlak Gorkehgz <rain8dome9 at gmail.com> > > wrote: > >> > >> Excuse me if I did not explain myself correctly but I currently use: > >> > >> list.of.packages <- c("caretEnsemble","logicFS"," > >> RWeka","ordinalNet","xgboost","mlr","caret","MLmetrics"," > bartMachine","spikeslab","party","rqPen","monomvn"," > foba","logicFS","rPython","qrnn","randomGLM","msaenet"," > Rborist","relaxo","ordinalNet","rrf","frbs","extraTrees"," > ipred","elasticnet","bst","brnn","Boruta","arm","elmNN"," > evtree","extraTrees","deepnet","kknn","KRLS","RSNNS","partDSA","plsRglm"," > quantregForest","ranger","inTrees") > >> new.packages <- list.of.packages[!(list.of.packages %in% > >> installed.packages()[,"Package"])] > >> if(length(new.packages)) install.packages(new.packages, dep = TRUE) > >> > >> #install.packages("mlr", dependencies = c("Depends", "Suggests")) > >> #install.packages("caret", dependencies = c("Depends", "Suggests")) > >> > >> caret adds new algorithms fairly often but does not put them into > >> suggests. > >> On Tue, Aug 1, 2017 at 12:45 AM, Bert Gunter <bgunter.4567 at gmail.com> > >> wrote: > >>> > >>> ?install.packages > >>> > >>> and pay attention to the "dependencies" argument. > >>> > >>> Th RStudio interface does not appear to allow for "suggests" packages > >>> (correction appreciated if this is wrong) , which the command line > >>> makes available. > >>> > >>> HTH. > >>> > >>> Cheers, > >>> Bert > >>> > >>> > >>> Bert Gunter > >>> > >>> "The trouble with having an open mind is that people keep coming along > >>> and sticking things into it." > >>> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > >>> > >>> > >>> On Mon, Jul 31, 2017 at 5:07 AM, Dimlak Gorkehgz <rain8dome9 at gmail.com > > > >>> wrote: > >>> > I am testing most of the models caret supports on a bunch of PCs. > >>> > Unfortunately caret "suggested" packages do not include most of the > >>> > model > >>> > packages available to caret. Every time a new version of R comes out > I > >>> > have > >>> > to sit in front of each PC and wait for each prompt to press the 1 > >>> > button > >>> > and Enter. Is there an option I could set to tell R or Rstudio to > just > >>> > install anything asked for? A for every a/s/n prompt too. > >>> > > >>> > [[alternative HTML version deleted]] > >>> > > >>> > ______________________________________________ > >>> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >>> > https://stat.ethz.ch/mailman/listinfo/r-help > >>> > PLEASE do read the posting guide > >>> > http://www.R-project.org/posting-guide.html > >>> > and provide commented, minimal, self-contained, reproducible code. > >> > >> > > >[[alternative HTML version deleted]]
You should read the section on Indexing in the Introduction to R document that comes with R, regarding $ and `[[`. -- Sent from my phone. Please excuse my brevity. On August 1, 2017 2:44:18 AM PDT, Dimlak Gorkehgz <rain8dome9 at gmail.com> wrote:>You are right, maintainer does keep a list of model's packages. > >So how do I use a variable instead of $adaboost$? > >getModelInfo()$adaboost$library > > > >Also, server not found: >http://rwiki.sciviews.org/doku.php?id=getting-started:reference-cards:getting-help > >On Tue, Aug 1, 2017 at 11:46 AM, Bert Gunter <bgunter.4567 at gmail.com> >wrote: > >> I have provided you all the "advice" I can. Sorry it didn't help. You >> should re-post your responses to me to r-help so that others might >> help. you might also email the maintainer, found via the maintainer() >> function, who may not monitor the list. >> >> Cheers, >> Bert >> Bert Gunter >> >> "The trouble with having an open mind is that people keep coming >along >> and sticking things into it." >> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) >> >> >> On Mon, Jul 31, 2017 at 9:38 PM, Dimlak Gorkehgz ><rain8dome9 at gmail.com> >> wrote: >> > tools::package_dependencies(packs, available.packages(), >> > + which=c("Imports", >> "LinkingTo","Enhances"), # >> > + recursive=T) >> > >> > >> > >> > (and suggests, and imports, and everything) does not include most >> packages >> > needed by every model. Recursive everything downloads most of all >> packages >> > available of CRAN. And then some necessary packages are not >available and >> > every pass through brings up a prompt for them. >> > >> > >> > >> > >> > On Tue, Aug 1, 2017 at 11:12 AM, Dimlak Gorkehgz ><rain8dome9 at gmail.com> >> > wrote: >> >> >> >> Excuse me if I did not explain myself correctly but I currently >use: >> >> >> >> list.of.packages <- c("caretEnsemble","logicFS"," >> >> RWeka","ordinalNet","xgboost","mlr","caret","MLmetrics"," >> bartMachine","spikeslab","party","rqPen","monomvn"," >> foba","logicFS","rPython","qrnn","randomGLM","msaenet"," >> Rborist","relaxo","ordinalNet","rrf","frbs","extraTrees"," >> ipred","elasticnet","bst","brnn","Boruta","arm","elmNN"," >> >evtree","extraTrees","deepnet","kknn","KRLS","RSNNS","partDSA","plsRglm"," >> quantregForest","ranger","inTrees") >> >> new.packages <- list.of.packages[!(list.of.packages %in% >> >> installed.packages()[,"Package"])] >> >> if(length(new.packages)) install.packages(new.packages, dep >TRUE) >> >> >> >> #install.packages("mlr", dependencies = c("Depends", "Suggests")) >> >> #install.packages("caret", dependencies = c("Depends", >"Suggests")) >> >> >> >> caret adds new algorithms fairly often but does not put them into >> >> suggests. >> >> On Tue, Aug 1, 2017 at 12:45 AM, Bert Gunter ><bgunter.4567 at gmail.com> >> >> wrote: >> >>> >> >>> ?install.packages >> >>> >> >>> and pay attention to the "dependencies" argument. >> >>> >> >>> Th RStudio interface does not appear to allow for "suggests" >packages >> >>> (correction appreciated if this is wrong) , which the command >line >> >>> makes available. >> >>> >> >>> HTH. >> >>> >> >>> Cheers, >> >>> Bert >> >>> >> >>> >> >>> Bert Gunter >> >>> >> >>> "The trouble with having an open mind is that people keep coming >along >> >>> and sticking things into it." >> >>> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip >) >> >>> >> >>> >> >>> On Mon, Jul 31, 2017 at 5:07 AM, Dimlak Gorkehgz ><rain8dome9 at gmail.com >> > >> >>> wrote: >> >>> > I am testing most of the models caret supports on a bunch of >PCs. >> >>> > Unfortunately caret "suggested" packages do not include most of >the >> >>> > model >> >>> > packages available to caret. Every time a new version of R >comes out >> I >> >>> > have >> >>> > to sit in front of each PC and wait for each prompt to press >the 1 >> >>> > button >> >>> > and Enter. Is there an option I could set to tell R or Rstudio >to >> just >> >>> > install anything asked for? A for every a/s/n prompt too. >> >>> > >> >>> > [[alternative HTML version deleted]] >> >>> > >> >>> > ______________________________________________ >> >>> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, >see >> >>> > https://stat.ethz.ch/mailman/listinfo/r-help >> >>> > PLEASE do read the posting guide >> >>> > http://www.R-project.org/posting-guide.html >> >>> > and provide commented, minimal, self-contained, reproducible >code. >> >> >> >> >> > >> > > [[alternative HTML version deleted]] > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.