Displaying 7 results from an estimated 7 matches for "aminoacid".
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aminoacids
2016 Dec 12
2
accessing data by packagename::dataname from within package code fails.
I have narrowed down the problem.
The error
Error : 'AminoAcids' is not an exported object from 'namespace:bibliospec'
Error : unable to load R code in package 'bibliospec'
occurs only if I try to access the data using bibliospec::AminoAcids
within the initialize method of an R reference class.
It does work, as far as I tested everywhere...
2004 Apr 29
1
RPART drawing the tree
Hello,
I am using the RPART library to find patterns in HIV mutations regarding
drug-resistancy.
My data consists of aminoacid at certain locations and two classes resistant
and susceptible.
The classification and pruning work fine with Rpart. however there is a
problem with displaying the data as a tree in the display window.
in the display window the data contain only levels at the splits example:
(abcde) left (fg)...
2009 Nov 29
2
kernlab's ksvm method freeze
Hello,
I am using kernlab to do some binary classification on aminoacid
strings.
I am using a custom kernel, so i use the kernel="matrix" option of the
ksvm method.
My (normalized) kernel matrix is of size 1309*1309, my results vector
has the same length.
I am using C-svc.
My kernlab call is something similiar to this:
ksvm(kernel="matrix", ker...
2016 Dec 21
2
different compilers and mzR build fails
...a/identdata/Serializer_pepXML.o
./pwiz/data/identdata/Serializer_mzid.o
./pwiz/data/identdata/IO.o
./pwiz/data/identdata/References.o
./pwiz/data/identdata/MascotReader.o
./pwiz/data/proteome/Modification.o
./pwiz/data/proteome/Digestion.o
./pwiz/data/proteome/Peptide.o
./pwiz/data/proteome/AminoAcid.o
./pwiz/utility/minimxml/XMLWriter.o
./pwiz/utility/minimxml/SAXParser.o
./pwiz/utility/chemistry/Chemistry.o
./pwiz/utility/chemistry/ChemistryData.o
./pwiz/utility/chemistry/MZTolerance.o
./pwiz/utility/misc/IntegerSet.o
./pwiz/utility/misc/Base64.o
./pwiz/utility/misc/IterationListener....
2016 Dec 21
1
different compilers and mzR build fails
...lizer_mzid.o
>> ./pwiz/data/identdata/IO.o
>> ./pwiz/data/identdata/References.o
>> ./pwiz/data/identdata/MascotReader.o
>> ./pwiz/data/proteome/Modification.o
>> ./pwiz/data/proteome/Digestion.o
>> ./pwiz/data/proteome/Peptide.o
>> ./pwiz/data/proteome/AminoAcid.o
>> ./pwiz/utility/minimxml/XMLWriter.o
>> ./pwiz/utility/minimxml/SAXParser.o
>> ./pwiz/utility/chemistry/Chemistry.o
>> ./pwiz/utility/chemistry/ChemistryData.o
>> ./pwiz/utility/chemistry/MZTolerance.o
>> ./pwiz/utility/misc/IntegerSet.o
>> ./pwiz/uti...
2016 Dec 21
0
different compilers and mzR build fails
...Serializer_pepXML.o
> ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o
> ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o
> ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o
> ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o
> ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o
> ./pwiz/utility/chemistry/Chemistry.o
> ./pwiz/utility/chemistry/ChemistryData.o
> ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o
> ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/I...
2010 Jan 17
6
More than on loop??
hello every one,
How to function more than one loop in R? I have the following problem to be
solved with the a method of three loops, can you help me please?
The data is attached with this message.
The data is composed of two parts, cleaved (denoted by ?cleaved?) and non
cleaved (denoted by ?noncleaved?).
? to access to the ith peptide, you can use X$Peptide[i]
? to access to the ith label,