Dear All, I think there is something wrong with rJava on any Debian based distribution. I may be wrong, but I experiencing exactly the problems mentioned at https://github.com/amattioc/SDMX/issues/130 and at https://github.com/s-u/rJava/issues/110 A couple of packages (RJSDMX and xlsx) are now impossible to install on my debian stretch platform running R 3.4. It seems I am not the only one experiencing this and it may be due to some security patches just released. However, if I run on my machine> library(rJava) > .jinit()I get a segmentation fault, though I was able to install rJava, it does not seem to work properly. Does anyone have a fix for that? Many thanks Lorenzo
On 26 June 2017 at 10:43, Lorenzo Isella wrote: | Dear All, | I think there is something wrong with rJava on any Debian based | distribution. It is a Java issue related to a security fix many (most? all?) distros applied. | I may be wrong, but I experiencing exactly the problems mentioned at | | https://github.com/amattioc/SDMX/issues/130 | | and at | | https://github.com/s-u/rJava/issues/110 | | A couple of packages (RJSDMX and xlsx) are now impossible to install | on my debian stretch platform running R 3.4. | | It seems I am not the only one experiencing this and it may be due to | some security patches just released. | However, if I run on my machine | | > library(rJava) | > .jinit() | | I get a segmentation fault, though I was able to install rJava, it | does not seem to work properly. | Does anyone have a fix for that? Reading the links you providing it also becomes clear that this is not an issue with rJava, or Debian -- it is Java, interacting with the kernel. For now, I would suggest following those discussions. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
Hi Dirk, It was unclear to me to which extent it is a kernel/security patch vs (r)Java issue. In any case, this is really problematic for me as it prevents me de facto from running some key R packages for my daily work. I'll post again if I see some solution (other than downgrading the kernel) somewhere. Meanwhile, any suggestions for a fix is welcome. Cheers Lorenzo On Mon, Jun 26, 2017 at 06:19:11AM -0500, Dirk Eddelbuettel wrote:> >On 26 June 2017 at 10:43, Lorenzo Isella wrote: >| Dear All, >| I think there is something wrong with rJava on any Debian based >| distribution. > >It is a Java issue related to a security fix many (most? all?) distros >applied. > >| I may be wrong, but I experiencing exactly the problems mentioned at >| >| https://github.com/amattioc/SDMX/issues/130 >| >| and at >| >| https://github.com/s-u/rJava/issues/110 >| >| A couple of packages (RJSDMX and xlsx) are now impossible to install >| on my debian stretch platform running R 3.4. >| >| It seems I am not the only one experiencing this and it may be due to >| some security patches just released. >| However, if I run on my machine >| >| > library(rJava) >| > .jinit() >| >| I get a segmentation fault, though I was able to install rJava, it >| does not seem to work properly. >| Does anyone have a fix for that? > >Reading the links you providing it also becomes clear that this is not an >issue with rJava, or Debian -- it is Java, interacting with the kernel. > >For now, I would suggest following those discussions. > >Dirk > >-- >http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
Hi everyone, I just wanted to say that yesterday my system received a kernel update and everything is back to normal. Cheers Lorenzo On Mon, Jun 26, 2017 at 06:19:11AM -0500, Dirk Eddelbuettel wrote:> >On 26 June 2017 at 10:43, Lorenzo Isella wrote: >| Dear All, >| I think there is something wrong with rJava on any Debian based >| distribution. > >It is a Java issue related to a security fix many (most? all?) distros >applied. > >| I may be wrong, but I experiencing exactly the problems mentioned at >| >| https://github.com/amattioc/SDMX/issues/130 >| >| and at >| >| https://github.com/s-u/rJava/issues/110 >| >| A couple of packages (RJSDMX and xlsx) are now impossible to install >| on my debian stretch platform running R 3.4. >| >| It seems I am not the only one experiencing this and it may be due to >| some security patches just released. >| However, if I run on my machine >| >| > library(rJava) >| > .jinit() >| >| I get a segmentation fault, though I was able to install rJava, it >| does not seem to work properly. >| Does anyone have a fix for that? > >Reading the links you providing it also becomes clear that this is not an >issue with rJava, or Debian -- it is Java, interacting with the kernel. > >For now, I would suggest following those discussions. > >Dirk > >-- >http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org