Hi, I just installed Ubuntu 12.04.4. I installed R by following instructions from CRAN after modification into my /etc/apt/sources.list file sudo apt-get update sudo apt-get install r-base sudo apt-get install r-base-dev When I try to load library(gdata) ou library(gplots), I have error message : library(gdata) gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. Attachement du package : ?gdata? L'objet suivant est masqu? from ?package:stats?: nobs L'objet suivant est masqu? from ?package:utils?: object.size> library(gplots)KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 Attachement du package : ?gplots? L'objet suivant est masqu? from ?package:stats?: lowess sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8 [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gplots_2.12.1 gdata_2.13.2 loaded via a namespace (and not attached): [1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10 Thanks, Elodie -- -- Elodie Chapeaublanc IE Bioinformatique ?quipe Oncologie Mol?culaire Institut Curie - UMR 144 - CNRS 26 rue d'Ulm - 75248 Paris Cedex 05 Tel: +33 1 56 24 63 57 Email: elodie.chapeaublanc at curie.fr
It seems to me that those are warnings, not errors. They simply reflect the fact that the authors of the R packages "gdata" and "gplots" have not been as careful as they should be about updating their packages. On Mon, Feb 24, 2014 at 10:17 AM, Elodie Chapeaublanc < elodie.chapeaublanc@curie.fr> wrote:> Hi, I just installed Ubuntu 12.04.4. I installed R by following > instructions from CRAN after modification into my /etc/apt/sources.list file > > sudo apt-get update > > sudo apt-get install r-base > > sudo apt-get install r-base-dev > > > When I try to load library(gdata) ou library(gplots), I have error > message : > > library(gdata) > > gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. > > gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. > > Attachement du package : 'gdata' > > L'objet suivant est masqué from 'package:stats': > > nobs > > L'objet suivant est masqué from 'package:utils': > > object.size > > library(gplots) >> > > KernSmooth 2.23 loaded > > Copyright M. P. Wand 1997-2009 > > Attachement du package : 'gplots' > > L'objet suivant est masqué from 'package:stats': > > lowess > > > > sessionInfo() > R version 3.0.2 (2013-09-25) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C > [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8 > [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 > [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] gplots_2.12.1 gdata_2.13.2 > > loaded via a namespace (and not attached): > [1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10 > > > Thanks, > > Elodie > > > > -- > -- > Elodie Chapeaublanc > IE Bioinformatique > Équipe Oncologie Moléculaire > Institut Curie - UMR 144 - CNRS > 26 rue d'Ulm - 75248 Paris Cedex 05 > Tel: +33 1 56 24 63 57 > Email: elodie.chapeaublanc@curie.fr > > _______________________________________________ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > >[[alternative HTML version deleted]]
At 16:17 24/02/2014, Elodie Chapeaublanc wrote:>Hi, I just installed Ubuntu 12.04.4. I installed >R by following instructions from CRAN after >modification into my /etc/apt/sources.list file > > sudo apt-get update > > sudo apt-get install r-base > > sudo apt-get install r-base-dev > > > When I try to load library(gdata) ou library(gplots), I have error message :Dear Elodie I am not that expert either at R or French but I do not see any error message there. See inline below>library(gdata) > >gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. > >gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. > >Attachement du package : ?gdata? > >L'objet suivant est masqu? from ?package:stats?: > > nobsIs this what was concerning you?>L'objet suivant est masqu? from ?package:utils?: > > object.size > >>library(gplots) > >KernSmooth 2.23 loaded > >Copyright M. P. Wand 1997-2009 > >Attachement du package : ?gplots? > >L'objet suivant est masqu? from ?package:stats?: > > lowess >At this point does running one of the examples from either package work?>sessionInfo() >R version 3.0.2 (2013-09-25) >Platform: x86_64-pc-linux-gnu (64-bit) > >locale: > [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C > [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8 > [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8 > [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C >[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C > >attached base packages: >[1] stats graphics grDevices utils datasets methods base > >other attached packages: >[1] gplots_2.12.1 gdata_2.13.2 > >loaded via a namespace (and not attached): >[1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10 > > >Thanks, > >Elodie > > > >-- >-- >Elodie Chapeaublanc >IE Bioinformatique >?quipe Oncologie Mol?culaire >Institut Curie - UMR 144 - CNRS >26 rue d'Ulm - 75248 Paris Cedex 05 >Tel: +33 1 56 24 63 57 >Email: elodie.chapeaublanc at curie.fr > >_______________________________________________ >R-SIG-Debian mailing list >R-SIG-Debian at r-project.org >https://stat.ethz.ch/mailman/listinfo/r-sig-debianMichael Dewey info at aghmed.fsnet.co.uk http://www.aghmed.fsnet.co.uk/home.html
Elodie, There is no error. Those are warning messages telling you that functions are masked -- just as it says. No more, no less. Amicalement, Dirk -- Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com