Martin R. Smith
2022-Jan-13 13:37 UTC
[R] [R-pkgs] Package "Rogue": Detect wildcard taxa in sets of phylogenetic trees
Dear R users, Package "Rogue" has been published on CRAN: https://CRAN.R-project.org/package=Rogue. "Rogue" improves phylogenetic analysis by detecting wildcard taxa whose inconsistent position reduces split support and resolution in consensus trees. It implements an effective new information-theoretic approach (Smith 2022, https://doi.org/10.1093/sysbio/syab099), and provides an R interface to the established "RogueNaRok" C library (Aberer et al. 2013, https://doi.org/10.1093/sysbio/sys078). A vignette demonstrating use on Bayesian posterior tree sets can be found at https://cran.r-project.org/web/packages/Rogue/vignettes/Bayesian.html. Questions and bug reports are welcome at https://github.com/ms609/Rogue. Regards, Martin Smith -- *Dr. Martin R. Smith* Associate Professor in Palaeontology Durham University Department of Earth Sciences Mountjoy Site, South Road, Durham, DH1 3LE United Kingdom *M*: +44 (0)774 353 7510 *E*: martin.smith at durham.ac.uk smithlabdurham.github.io twitter.com/PalaeoSmith The information in this e-mail and any attachments is co...{{dropped:7}}