On Wed, 8 Jun 2011, Mariana Varela wrote:
> Hi, I just installed the 2.13 version for Mac (without uninstalling
As the posting guide says, there is no such version of R ....
Also, I think you did uninstall a previous version, for it is missing
and the default behaviour of the Apple installer is to delete previous
versions.
> the previous versions). I transferred the folder library containing
> the packages I normally use to the 2.13 library folder. When I
> require any package this is what I get:
>
> require(ape)
> Loading required package: ape
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/gee/libs/x86_64/gee.so':
>
dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/gee/libs/x86_64/gee.so,
6): Library not loaded:
/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libRblas.dylib
> Referenced from:
/Library/Frameworks/R.framework/Versions/2.13/Resources/library/gee/libs/x86_64/gee.so
> Reason: image not found
>
> However when type "library" the packages are there.
>
> Any hints?
Read the documentation: that is not the way to update! But given that
you have done so, run
update.packages(checkBuilt = TRUE)
at the R prompt to download and install updated versions of your
packages.
We do ask that Mac questions are asked on r-sig-mac, at least if this
is for the CRAN distribution of R (there are others, and it is
substantially different from building R from the sources for
yourself). One of the many things that is non-standard about that
distribution is that it hardcodes library paths in its DSOs, so any
package with compiled code is tied to a small range (e.g. 2.12.[012])
of R versions.
You will find a lot of discussion about updating in the recent
r-sig-mac archives. See also the rw-FAQ at
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#What_0027s-the-best-way-to-upgrade_003f
> Many thanks
> Mariana
>
> --
> Mariana Varela, DVM, PhD
> MRC-University of Glasgow Centre for Virus Research
> Institute of Infection, Immunity and Inflammation
> College of Medical, Veterinary and Life Sciences
> Garscube Estate, 464 Bearsden Road
> Henry Wellcome Building, room 436
> Glasgow, G61 1QH
> Scotland (UK)
> Phone: +44 (0) 141 330 2196
>
>
> [[alternative HTML version deleted]]
>
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> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595