Le jeu. 22 nov. ? 14:19, Daniel Nordlund a ?crit :
> I am running Ubuntu 7.10 and R-2.6.0, and I am having trouble
> updating packages. There appears to be a problem involving
> gfortran. For example, here is the output of an attempt to update
> the Hmisc package.
>
> * Installing *source* package 'Hmisc' ...
> ** libs
> gfortran -fpic -g -O2 -c cidxcn.f -o cidxcn.o
> gfortran -fpic -g -O2 -c cidxcp.f -o cidxcp.o
> gfortran -fpic -g -O2 -c hoeffd.f -o hoeffd.o
> gfortran -fpic -g -O2 -c jacklins.f -o jacklins.o
> gfortran -fpic -g -O2 -c largrec.f -o largrec.o
> gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -
> fpic -g -O2 -c ranksort.c -o ranksort.o
> gfortran -fpic -g -O2 -c rcorr.f -o rcorr.o
> gfortran -fpic -g -O2 -c wclosest.f -o wclosest.o
> gcc -std=gnu99 -shared -o Hmisc.so cidxcn.o cidxcp.o hoeffd.o
> jacklins.o largrec.o ranksort.o rcorr.o wclosest.o -lgfortran -lm -
> lgcc_s -L/usr/lib/R/lib -lR
> /usr/bin/ld: cannot find -lgfortran
> collect2: ld returned 1 exit status
> make: *** [Hmisc.so] Error 1
> ERROR: compilation failed for package 'Hmisc'
> ** Removing '/usr/local/lib/R/site-library/Hmisc'
> ** Restoring previous '/usr/local/lib/R/site-library/Hmisc'
>
> The downloaded packages are in
> /tmp/RtmpkaH0Db/downloaded_packages
> Warning message:
> In install.packages(update[instlib == l, "Package"], l,
contriburl =
> contriburl, :
> installation of package 'Hmisc' had non-zero exit status
>>
Hi Daniel,
The package built and installed flawlessly here in the Gutsy chroot
where the Ubuntu packages are built. Did you install the r-base-dev
package? This package will install all the tools you need to install
source packages.
Best,
---
Vincent Goulet, Associate Professor
?cole d'actuariat
Universit? Laval, Qu?bec
Vincent.Goulet at act.ulaval.ca http://vgoulet.act.ulaval.ca
>
> I tried searching on the error message
>
> /usr/bin/ld: cannot find -lgfortran
>
> along with R and Ubuntu and was not able to find anything that was
> helpful to me. I have successfully updated packages on Ubuntu 6.10
> and 7.04. I am sure somebody knows what is happening here, and I
> would appreciate any pointers to what I am doing wrong.
>
> Thanks,
>
> Dan
>
> Daniel Nordlund
> Bothell, WA
>
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