Johanna Hasmats wrote:> Ok, attaching all files. You need to run it in the following order:
>
> parse.RData
>
> Korrelation.RData I have reduced this script to only include the error
> part.
>
>
> Input files are in the following order:
>
> oligo.prest.out for parse.RData to work. Produces the next input file
>
> oligolista for Korrelation.RData to work, which also needs the input file
>
> 8_SkBr _13433630.gpr.
>
>
> The function GenePixData can be found in the aroma package.
>
> Thank you for your help,
1. Package kth is unavailable for us.
2. I do not know anything about a package called "aroma", it is
neither
on CRAN nor in the BioC repositories.
3. Can you please also try to make your example smaller?
4. The convention is to save R objects in .Rdata files, but to have R
code in .R files.
Uwe Ligges
> Johanna
>
>
>
>
>
>
>
>
> *******************************************************************
> Johanna Hasmats
> Royal Institute of Technology
> AlbaNova University Center
> Stockholm Center for Physics, Astronomy and Biotechnology
> School of Molecular Biotechnology
> Department of Gene Technology
> Visiting address:
> Roslagstullsbacken 21, Floor 3
> 106 91 Stockholm, Sweden
> Delivering address:
> Roslagsv?gen 30 B
> 104 06 Stockholm, Sweden
> Phone (office) +46 8 553 783 44
> Fax + 46 8 553 784 81
> ******************************************************************
>
> -----Original Message-----
> From: Deepayan Sarkar [mailto:deepayan.sarkar at gmail.com]
> Sent: Friday, August 31, 2007 8:12 PM
> To: Uwe Ligges
> Cc: Johanna Hasmats; r-help at stat.math.ethz.ch
> Subject: Re: [R] Bug?
>
> On 8/31/07, Uwe Ligges <ligges at statistik.uni-dortmund.de> wrote:
>>
>> Johanna Hasmats wrote:
>>> Hi!
>>>
>>>
>>>
>>> How can I get around in R 2.5.1 in Windows:
>>>
>>>
>>>
>>> Error in strsplit(linebuffer, "") : object
"linebuffer" not found
>>
>> Why should this be a bug in R, if you have no object named
"linebuffer"
>> in the environments that are on the search path.
>
> This sounds like it could have something to do with the command
> completion mechanism through package rcompgen (which does use an
> internal variable called 'linebuffer'). Since this doesn't seem
to be
> a common problem, you need to give us instructions on how to reproduce
> it.
>
> -Deepayan
