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Mark Kimpel

2009-Sep-16 19:51 UTC

[Rd] 2.10.0 Under development (unstable) (2009-09-15 r49711) just built segfaults on Debian Squeeze

I just downloaded R-devel and when loaded it immediately segfaults. I'm not
sure how much or what sort of diagnostic info and can provide, but below is
my build script, my console output, and the output of uname -r. I am
currently dependent on the development version of a package, so I'd like to
get R-devel up and running if possible. I am sure there is more info I can
provide, but before deluging the list with unnecessary output, I thought I
would ask first what would be helpfu. Mark

#Make R
cd ~/R_HOME
wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
tar -xzf R-devel.tar.gz
cd ~/R_HOME/R-devel
mkdir R-build
cd R-build
../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
make all
make install

#####################################33
# console output
mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R

R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


 *** caught segfault ***
address (nil), cause 'memory not mapped'

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 2
Save workspace image? [y/n/c]: n

######################################
# kernel version
mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: uname -r
2.6.30-1-amd64
mkimpel-XPS ~/R_HOME/R-devel/R-build/bin:


Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 399-1219 Skype No Voicemail please

	[[alternative HTML version deleted]]

Simon Urbanek

2009-Sep-16 20:17 UTC

head link

[Rd] 2.10.0 Under development (unstable) (2009-09-15 r49711) just built segfaults on Debian Squeeze

Mark,

On Sep 16, 2009, at 15:51 , Mark Kimpel wrote:
> I just downloaded R-devel and when loaded it immediately segfaults.  
> I'm not
> sure how much or what sort of diagnostic info and can provide,
At the very least something like
R -d gdb
and the output of bt would be helpful. Then in general things like the  
exact compilers used are needed, especially on "testing" Linux (note  
that you probably don't want to use anything more recent then gcc 4.3  
due to bugs). Also it's a good idea to run make check before make  
install ...

The script you supplied (and the resulting R) works just fine for me  
on lenny (modulo the --prefix).

Cheers,
Simon

> but below is
> my build script, my console output, and the output of uname -r. I am
> currently dependent on the development version of a package, so I'd  
> like to
> get R-devel up and running if possible. I am sure there is more info  
> I can
> provide, but before deluging the list with unnecessary output, I  
> thought I
> would ask first what would be helpfu. Mark
>
> #Make R
> cd ~/R_HOME
> wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
> tar -xzf R-devel.tar.gz
> cd ~/R_HOME/R-devel
> mkdir R-build
> cd R-build
> ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
> make all
> make install
>
> #####################################33
> # console output
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R
>
> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
> Copyright (C) 2009 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>
>  Natural language support but running in an English locale
>
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
>
>
> *** caught segfault ***
> address (nil), cause 'memory not mapped'
>
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: 2
> Save workspace image? [y/n/c]: n
>
> ######################################
> # kernel version
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: uname -r
> 2.6.30-1-amd64
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin:
>
>
> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
> Indiana University School of Medicine
>
> 15032 Hunter Court, Westfield, IN  46074
>
> (317) 490-5129 Work, & Mobile & VoiceMail
> (317) 399-1219 Skype No Voicemail please
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

Peter Dalgaard

2009-Sep-16 20:45 UTC

head link

[Rd] 2.10.0 Under development (unstable) (2009-09-15 r49711) just built segfaults on Debian Squeeze

Mark Kimpel wrote:> I just downloaded R-devel and when loaded it immediately segfaults. I'm
not
> sure how much or what sort of diagnostic info and can provide, but below is
> my build script, my console output, and the output of uname -r. I am
> currently dependent on the development version of a package, so I'd
like to
> get R-devel up and running if possible. I am sure there is more info I can
> provide, but before deluging the list with unnecessary output, I thought I
> would ask first what would be helpfu. Mark
Not happening for me with 49727 (SUSE 64bit).

Do you have a saved workspace in that dir by any chance?

Could you try

R --vanilla

and

R -d gdb
followed by "run" and "bt" on the segfault
> #Make R
> cd ~/R_HOME
> wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
> tar -xzf R-devel.tar.gz
> cd ~/R_HOME/R-devel
> mkdir R-build
> cd R-build
> ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
> make all
> make install
> 
> #####################################33
> # console output
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R
> 
> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
> Copyright (C) 2009 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
>   Natural language support but running in an English locale
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> 
> 
>  *** caught segfault ***
> address (nil), cause 'memory not mapped'
> 
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: 2
> Save workspace image? [y/n/c]: n
> 
> ######################################
> # kernel version
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: uname -r
> 2.6.30-1-amd64
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin:
> 
> 
> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
> Indiana University School of Medicine
> 
> 15032 Hunter Court, Westfield, IN  46074
> 
> (317) 490-5129 Work, & Mobile & VoiceMail
> (317) 399-1219 Skype No Voicemail please
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
    O__  ---- Peter Dalgaard             ?ster Farimagsgade 5, Entr.B
   c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
  (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)              FAX: (+45) 35327907

Mark Kimpel

2009-Sep-17 00:18 UTC

head link

[Rd] 2.10.0 Under development (unstable) (2009-09-15 r49711) just built segfaults on Debian Squeeze

Below is my .Rprofile and the my.update.packages function that it calls
(which is in the right place and has not caused problems before). As I was
writing this, R just finished compiling using gcc-4.3. R once again crashes
as it did with the 4.4 compile. Just for completeness, immediately below is
my build script, the followed by .Rprofile. Thanks guys!

#############################################################3
# build R-devel
cd ~/R_HOME
wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
tar -xzf R-devel.tar.gz
cd ~/R_HOME/R-devel
mkdir R-build
cd R-build
../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
CC=/usr/bin/gcc-4.3 CXX=/usr/bin/g++-4.3 F77=/usr/bin/gfortran-4.3
make all
make install
# end build script
#####################################
# .Rprofile
#tell R where site-library is
ver <- getRversion()
options(editor="emacs")

if (ver == "2.9.1"){.libPaths(new=
"~/R_HOME/site-library-2.9.0")}
if (ver == "2.10.0"){.libPaths(new=
"~/R_HOME/site-library-2.10.0")}

options(htmlhelp=TRUE)
options(browser="firefox newTab")

#update packages
source("~/R.functions/General_Functions/my.update.packages.func.R")
if (interactive()) { #needed to keep R from looping as it calls R for
install scripts
  my.update.packages.func(force = FALSE)
  ##################################################
  # source function loader function and execute it

source("~/R.functions/General_Functions/UtilityFunctions/load.R.func.files.R")
  get.and.load.functions.func()
  ######################################################################
  # set error recovery option
  options(error=utils::recover)
}
#################################################
# end .Rprofile
################################################
# ~/R.functions/General_Functions/UtilityFunctions/load.R.func.files.R
my.update.packages.func <- function(update.interveral.days = 7, force TRUE){
    require(utils)
    old.wd <- getwd()
    setwd("~/")
    last.update.error <- try(load(file = ".Rupdate.date"), TRUE)
    if(inherits(last.update.error, "try-error")) {last.update <-
as.POSIXct("2007-01-01")} else {
      load(file = ".Rupdate.date")} #if .Rupdate.date does not exist
or
can't load, update
    if(force) {last.update <-  as.POSIXct("2007-01-01")} #allow to
force
updates
    current.time <- Sys.time()
    time.diff <- current.time - last.update
       if(
       (
        (units(time.diff) == "days")
          &&
        (time.diff[[1]][1] >= update.interveral.days)
        ) ||
       inherits(last.update.error, "try-error")
       ){  #then update
############################################################################
##From Jim McDonald: I just have the above in my .Rprofile file, so
biocLite() is always there for me.
           source("http://www.bioconductor.org/biocLite.R")
           biocLite("Biobase")
           library("Biobase")
           repos <- biocReposList()
           update.packages(repos=repos,
ask=FALSE)###################################################
           update.packages(repos="http://www.omegahat.org/R", ask =
FALSE)
           last.update <- current.time
           local(save(last.update, file = ".Rupdate.date"))
           print("packages updated")
       } else {print("packages do not need updated")}
    setwd(old.wd)
  }
###############################################
# End file
########################################
Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 399-1219 Skype No Voicemail please


On Wed, Sep 16, 2009 at 8:10 PM, Simon Urbanek
<simon.urbanek@r-project.org>wrote:
>
> On Sep 16, 2009, at 7:48 PM, Mark Kimpel wrote:
>
>  Peter,
>>
>> I have not yet tried Simon's suggestion of using gcc 4.3 (just got
back
>> from
>> a meeting), but running your commands produces the output below. As you
>> can
>> see, R --vanilla works, but just plain "R" doesn't.
>>
>
> Please send us you .Rprofile because that's likely what's causing
the crash
> ... (reading a profile causes the crash, so unless you have a custom site
> profile the .Rprofile is the one to blame).
>
> Thanks,
> S
>
>
>
>
>  See the results of gdb
>> far below.
>>
>> I do not have a saved workspace in my R_HOME or any of its
subdirectories.
>>
>> Will report back on what I get with gcc 4.3 just as soon as I read the
>> R-admin manual and figure out how to get configure configured....
>>
>> Mark
>>
>>
>> mkimpel-XPS ~/sshfs: R --vanilla
>>
>> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
>> Copyright (C) 2009 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>>
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution
details.
>>
>>  Natural language support but running in an English locale
>>
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>>
>> Type 'demo()' for some demos, 'help()' for on-line
help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>>
>>  q()
>>>
>> mkimpel-XPS ~/sshfs: R
>>
>> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
>> Copyright (C) 2009 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>>
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution
details.
>>
>>  Natural language support but running in an English locale
>>
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>>
>> Type 'demo()' for some demos, 'help()' for on-line
help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>>
>>
>> *** caught segfault ***
>> address (nil), cause 'memory not mapped'
>>
>> Possible actions:
>> 1: abort (with core dump, if enabled)
>> 2: normal R exit
>> 3: exit R without saving workspace
>> 4: exit R saving workspace
>> Selection: 4
>> mkimpel-XPS ~/sshfs: R -d gdb
>> GNU gdb (GDB) 6.8.50.20090628-cvs-debian
>> Copyright (C) 2009 Free Software Foundation, Inc.
>> License GPLv3+: GNU GPL version 3 or later <
>> http://gnu.org/licenses/gpl.html
>>
>>>
>>>  This is free software: you are free to change and redistribute it.
>> There is NO WARRANTY, to the extent permitted by law.  Type "show
copying"
>> and "show warranty" for details.
>> This GDB was configured as "x86_64-linux-gnu".
>> For bug reporting instructions, please see:
>> <http://www.gnu.org/software/gdb/bugs/>...
>> (gdb) run
>> Starting program:
/home/mkimpel/R_HOME/R-devel/R-build/lib64/R/bin/exec/R
>>
>> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
>> Copyright (C) 2009 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>>
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution
details.
>>
>>  Natural language support but running in an English locale
>>
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>>
>> Type 'demo()' for some demos, 'help()' for on-line
help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>>
>>
>> Program received signal SIGSEGV, Segmentation fault.
>> Rf_setAttrib (vec=0x12e3d68, name=0x94d450, val=0x0) at
>> ../../../src/main/attrib.c:226
>> 226        if (NAMED(val)) val = duplicate(val);
>> (gdb) bt
>> #0  Rf_setAttrib (vec=0x12e3d68, name=0x94d450, val=0x0) at
>> ../../../src/main/attrib.c:226
>> #1  0x000000000056264f in xxexprlist1 () at gram.y:574
>> #2  Rf_yyparse () at gram.y:337
>> #3  0x0000000000563469 in R_Parse1 (status=0x94d450) at gram.y:1126
>> #4  0x0000000000563cfb in R_Parse1File (fp=0x1200920, gencode=1,
>> status=0x7fffffffcd94, first=<value optimized out>) at
gram.y:1164
>> #5  0x0000000000416cb2 in R_ReplFile (fp=0x1200920, rho=0x973338,
>> savestack=0, browselevel=<value optimized out>) at
>> ../../../src/main/main.c:87
>> #6  0x0000000000416e08 in R_LoadProfile (fparg=<value optimized
out>,
>> env=0x973338) at ../../../src/main/main.c:651
>> #7  0x00000000004172c2 in setup_Rmainloop () at
>> ../../../src/main/main.c:875
>> #8  0x00000000004185c9 in Rf_mainloop () at
../../../src/main/main.c:967
>> #9  0x0000000000415c38 in main (ac=<value optimized out>,
av=<value
>> optimized out>) at ../../../src/main/Rmain.c:33
>> #10 0x00007ffff6ed05c6 in __libc_start_main () from /lib/libc.so.6
>> #11 0x0000000000415b29 in _start () at
../sysdeps/x86_64/elf/start.S:113
>> (gdb)
>>
>> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
>> Indiana University School of Medicine
>>
>> 15032 Hunter Court, Westfield, IN  46074
>>
>> (317) 490-5129 Work, & Mobile & VoiceMail
>> (317) 399-1219 Skype No Voicemail please
>>
>>
>> On Wed, Sep 16, 2009 at 4:45 PM, Peter Dalgaard
<p.dalgaard@biostat.ku.dk
>> >wrote:
>>
>>  Mark Kimpel wrote:
>>>
>>>  I just downloaded R-devel and when loaded it immediately
segfaults. I'm
>>>> not
>>>> sure how much or what sort of diagnostic info and can provide,
but below
>>>> is
>>>> my build script, my console output, and the output of uname -r.
I am
>>>> currently dependent on the development version of a package, so
I'd like
>>>> to
>>>> get R-devel up and running if possible. I am sure there is more
info I
>>>> can
>>>> provide, but before deluging the list with unnecessary output,
I thought
>>>> I
>>>> would ask first what would be helpfu. Mark
>>>>
>>>>
>>> Not happening for me with 49727 (SUSE 64bit).
>>>
>>> Do you have a saved workspace in that dir by any chance?
>>>
>>> Could you try
>>>
>>> R --vanilla
>>>
>>> and
>>>
>>> R -d gdb
>>> followed by "run" and "bt" on the segfault
>>>
>>> #Make R
>>>
>>>> cd ~/R_HOME
>>>> wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
>>>> tar -xzf R-devel.tar.gz
>>>> cd ~/R_HOME/R-devel
>>>> mkdir R-build
>>>> cd R-build
>>>> ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
>>>> make all
>>>> make install
>>>>
>>>> #####################################33
>>>> # console output
>>>> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R
>>>>
>>>> R version 2.10.0 Under development (unstable) (2009-09-15
r49711)
>>>> Copyright (C) 2009 The R Foundation for Statistical Computing
>>>> ISBN 3-900051-07-0
>>>>
>>>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>>>> You are welcome to redistribute it under certain conditions.
>>>> Type 'license()' or 'licence()' for
distribution details.
>>>>
>>>> Natural language support but running in an English locale
>>>>
>>>> R is a collaborative project with many contributors.
>>>> Type 'contributors()' for more information and
>>>> 'citation()' on how to cite R or R packages in
publications.
>>>>
>>>> Type 'demo()' for some demos, 'help()' for
on-line help, or
>>>> 'help.start()' for an HTML browser interface to help.
>>>> Type 'q()' to quit R.
>>>>
>>>>
>>>> *** caught segfault ***
>>>> address (nil), cause 'memory not mapped'
>>>>
>>>> Possible actions:
>>>> 1: abort (with core dump, if enabled)
>>>> 2: normal R exit
>>>> 3: exit R without saving workspace
>>>> 4: exit R saving workspace
>>>> Selection: 2
>>>> Save workspace image? [y/n/c]: n
>>>>
>>>> ######################################
>>>> # kernel version
>>>> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: uname -r
>>>> 2.6.30-1-amd64
>>>> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin:
>>>>
>>>>
>>>> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
>>>> Indiana University School of Medicine
>>>>
>>>> 15032 Hunter Court, Westfield, IN  46074
>>>>
>>>> (317) 490-5129 Work, & Mobile & VoiceMail
>>>> (317) 399-1219 Skype No Voicemail please
>>>>
>>>>      [[alternative HTML version deleted]]
>>>>
>>>> ______________________________________________
>>>> R-devel@r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>>
>>>>
>>>
>>> --
>>>  O__  ---- Peter Dalgaard             Øster Farimagsgade 5, Entr.B
>>> c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
>>> (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45)
35327918
>>> ~~~~~~~~~~ - (p.dalgaard@biostat.ku.dk)              FAX: (+45)
35327907
>>>
>>>
>>        [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
>
	[[alternative HTML version deleted]]

Duncan Murdoch

2009-Sep-17 01:49 UTC

head link

[Rd] 2.10.0 Under development (unstable) (2009-09-15 r49711) just built segfaults on Debian Squeeze

Okay, I've tracked this down, and it's a stupid error I made when trying
to improve the error messages.  I tried to make the parser remember its 
position in a file when parsing it line by line so that it could report 
on syntax errors properly; the trouble is that when it executes one of 
those lines (like yours containing source()), it might re-enter the 
parser.  It needs to save and restore its state around that sort of call.

This will be fairly easy to fix, but I won't be able to do it until 
tomorrow.

Duncan Murdoch


On 16/09/2009 3:51 PM, Mark Kimpel wrote:> I just downloaded R-devel and when loaded it immediately segfaults. I'm
not
> sure how much or what sort of diagnostic info and can provide, but below is
> my build script, my console output, and the output of uname -r. I am
> currently dependent on the development version of a package, so I'd
like to
> get R-devel up and running if possible. I am sure there is more info I can
> provide, but before deluging the list with unnecessary output, I thought I
> would ask first what would be helpfu. Mark
> #Make R
> cd ~/R_HOME
> wget ftp://ftp.stat.math.ethz.ch/Software/R/R-devel.tar.gz
> tar -xzf R-devel.tar.gz
> cd ~/R_HOME/R-devel
> mkdir R-build
> cd R-build
> ../configure --prefix=/home/mkimpel/R_HOME/R-devel/R-build
> make all
> make install
> 
> #####################################33
> # console output
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: ./R
> 
> R version 2.10.0 Under development (unstable) (2009-09-15 r49711)
> Copyright (C) 2009 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
>   Natural language support but running in an English locale
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> 
> 
>  *** caught segfault ***
> address (nil), cause 'memory not mapped'
> 
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: 2
> Save workspace image? [y/n/c]: n
> 
> ######################################
> # kernel version
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin: uname -r
> 2.6.30-1-amd64
> mkimpel-XPS ~/R_HOME/R-devel/R-build/bin:
> 
> 
> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
> Indiana University School of Medicine
> 
> 15032 Hunter Court, Westfield, IN  46074
> 
> (317) 490-5129 Work, & Mobile & VoiceMail
> (317) 399-1219 Skype No Voicemail please
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

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