I am receiving the following errors when trying to install
gcrma and a number of other Bioconductor packages when
the installWithVers flag is set to be TRUE.
>source("http://www.bioconductor.org/getBioC.R");
>getBioC("gcrma", installWithVers=T);
Running biocinstall version 2.0.7 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase.... etc etc.....
Error: evaluation nested too deeply: infinite recursion /
options(expressions=)?
Execution halted
ERROR: lazy loading failed for package 'gcrma'
** Removing 'R-2.5.0/library/gcrma_2.8.0'
Session Info below:
R version 2.5.0 (2007-04-23)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
any help appreciated..
Anna
Anna Lobley wrote:> I am receiving the following errors when trying to install > gcrma and a number of other Bioconductor packages when > the installWithVers flag is set to be TRUE. > > >source("http://www.bioconductor.org/getBioC.R"); > >getBioC("gcrma", installWithVers=T); >Hi, Anna. You will probably want to follow the instructions here: http://bioconductor.org/docs/install-howto.html Sean