Nomis101 at web.de
2006-Jun-16 10:21 UTC
[Rd] 3 Bugs in R (with R.crash.log) under OSX 10.4.6
Hi, i'm a biologie-student and nedd R for Analyzing my datas. But i have 3
bis Problems with R. I run R 2.3.1 on a G4 PPC with OSX 10.4.6 and Quicktime
7.1.1.
First Problem:
Open Windows (R-Skript ausf?hren, Arbeitsverzeichnis wechseln...) doesn't
close after opening.
Second Problem:
If i make a boxplot with my datas, than copy the boxplot and paste it into
"Preview" as an new image and save it as JPEG, then R crashes. The
R.crash.log than tells me:
Date/Time: 2006-06-14 21:37:08.869 +0200
OS Version: 10.4.6 (Build 8I127)
Report Version: 4
Command: R
Path: /Applications/Biologie- und Chemie-Programme/R
2.3.1/R.app/Contents/MacOS/R
Parent: WindowServer [63]
Version: 1.16 (3198)
PID: 215
Thread: 0
Exception: EXC_BREAKPOINT (0x0006)
Code[0]: 0x00000001
Code[1]: 0x92991120
Thread 0 Crashed:
0 com.apple.Foundation 0x92991120 _NSRaiseError + 264
1 com.apple.AppKit 0x93764d50 -[NSView _drawRect:clip:] + 2472
2 com.apple.AppKit 0x937641b8 -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 404
3 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
4 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
5 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
6 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
7 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
8 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
9 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
10 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
11 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
12 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
13 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
14 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
15 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
16 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
17 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
18 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
19 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
20 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
21 com.apple.AppKit 0x938c28e0 -[NSBrowser
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 164
22 com.apple.AppKit 0x93766f00 _recursiveDisplayInRect2 + 84
23 com.apple.CoreFoundation 0x907f33c4 CFArrayApplyFunction + 416
24 com.apple.AppKit 0x937642cc -[NSView
_recursiveDisplayAllDirtyWithLockFocus:visRect:] + 680
25 com.apple.AppKit 0x93763780 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 196
26 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
27 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
28 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
29 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
30 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
31 com.apple.AppKit 0x93763d48 -[NSView
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 1676
32 com.apple.AppKit 0x937843e4 -[NSThemeFrame
_recursiveDisplayRectIfNeededIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:topView:]
+ 192
33 com.apple.AppKit 0x9375d3f4 -[NSView
_displayRectIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:] + 384
34 com.apple.AppKit 0x937526e8 -[NSView displayIfNeeded] + 248
35 com.apple.AppKit 0x93752558 -[NSWindow displayIfNeeded] + 180
36 com.apple.AppKit 0x93752404 _handleWindowNeedsDisplay + 200
37 com.apple.CoreFoundation 0x907e373c __CFRunLoopDoObservers + 352
38 com.apple.CoreFoundation 0x907e39ec __CFRunLoopRun + 436
39 com.apple.CoreFoundation 0x907e347c CFRunLoopRunSpecific + 268
40 com.apple.HIToolbox 0x9321d980 RunCurrentEventLoopInMode + 264
41 com.apple.HIToolbox 0x9321d014 ReceiveNextEventCommon + 380
42 com.apple.HIToolbox 0x9321ce80
BlockUntilNextEventMatchingListInMode + 96
43 com.apple.AppKit 0x9371ee84 _DPSNextEvent + 384
44 com.apple.AppKit 0x9371eb48 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
45 org.R-project.R 0x0000dbf4 -[RController doProcessEvents:] +
104 (RController.m:1824)
46 org.R-project.R 0x0000b730 -[RController handleReadConsole:]
+ 88 (RController.m:869)
47 org.R-project.R 0x0002c0b8 Re_ReadConsole + 108
(Rcallbacks.m:137)
48 org.R-project.R 0x0003223c run_REngineRmainloop + 300
(Rinit.c:341)
49 org.R-project.R 0x0002aa1c -[REngine runREPL] + 68
(REngine.m:167)
50 org.R-project.R 0x0001d340 main + 680 (main.m:101)
51 org.R-project.R 0x00002e8c _start + 340 (crt.c:272)
52 org.R-project.R 0x00002d34 start + 60
Thread 1:
0 libSystem.B.dylib 0x9000b0a8 mach_msg_trap + 8
1 libSystem.B.dylib 0x9000affc mach_msg + 60
2 com.apple.CoreFoundation 0x907e3b78 __CFRunLoopRun + 832
3 com.apple.CoreFoundation 0x907e347c CFRunLoopRunSpecific + 268
4 com.apple.Foundation 0x9296b598 -[NSConnection sendInvocation:] +
1468
5 com.apple.Foundation 0x9296a034 -[NSObject(NSForwardInvocation)
forward::] + 408
6 libobjc.A.dylib 0x90a4b0b0 _objc_msgForward + 176
7 com.apple.Foundation 0x9296a39c -[NSDistantObject
methodSignatureForSelector:] + 268
8 com.apple.Foundation 0x92969f04 -[NSObject(NSForwardInvocation)
forward::] + 104
9 libobjc.A.dylib 0x90a4b0b0 _objc_msgForward + 176
10 org.R-project.R 0x0000acc0 -[RController readThread:] + 2436
(RController.m:613)
11 com.apple.Foundation 0x92976194 forkThreadForFunction + 108
12 libSystem.B.dylib 0x9002ba68 _pthread_body + 96
Thread 2:
0 libSystem.B.dylib 0x9002c128 semaphore_wait_signal_trap + 8
1 libSystem.B.dylib 0x90030bec pthread_cond_wait + 480
2 com.apple.Foundation 0x9297d300 -[NSConditionLock
lockWhenCondition:] + 68
3 com.apple.AppKit 0x937bbaac -[NSUIHeartBeat
_heartBeatThread:] + 324
4 com.apple.Foundation 0x92976194 forkThreadForFunction + 108
5 libSystem.B.dylib 0x9002ba68 _pthread_body + 96
Thread 3:
0 libSystem.B.dylib 0x9002edcc kevent + 12
1 com.apple.DesktopServices 0x9288a2b0
TFSNotificationTask::FSNotificationTaskProc(void*) + 56
2 ...ple.CoreServices.CarbonCore 0x90bc9260 PrivateMPEntryPoint + 76
3 libSystem.B.dylib 0x9002ba68 _pthread_body + 96
Thread 4:
0 libSystem.B.dylib 0x9002c128 semaphore_wait_signal_trap + 8
1 libSystem.B.dylib 0x90030bec pthread_cond_wait + 480
2 ...ple.CoreServices.CarbonCore 0x90bc9450 MPWaitOnQueue + 224
3 com.apple.DesktopServices 0x9288a92c
TNodeSyncTask::SyncTaskProc(void*) + 116
4 ...ple.CoreServices.CarbonCore 0x90bc9260 PrivateMPEntryPoint + 76
5 libSystem.B.dylib 0x9002ba68 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x0000000092991120 srr1: 0x000000000202f030
vrsave: 0x0000000000000000
cr: 0x24042442 xer: 0x0000000000000004 lr: 0x00000000929910f8
ctr: 0x0000000092952f1c
r0: 0x0000000000000000 r1: 0x00000000bfffcfe0 r2: 0x00000000a2950508
r3: 0x00000000bfffcb90
r4: 0x0000000000000000 r5: 0x0000000092952844 r6: 0x00000000bfffcc14
r7: 0x00000000000000ff
r8: 0x00000000bfffcc00 r9: 0x000000000423a9f0 r10: 0x0000000090a44628
r11: 0x0000000024042442
r12: 0x0000000092952f1c r13: 0x0000000000000000 r14: 0x00000000bfffe270
r15: 0x0000000000000001
r16: 0x0000000000564940 r17: 0x0000000000000000 r18: 0x0000000000000000
r19: 0x0000000000000000
r20: 0x00000000a37536bc r21: 0x00000000a3754024 r22: 0x00000000bfffd650
r23: 0x0000000000000001
r24: 0x00000000bfffd310 r25: 0x0000000000000000 r26: 0x0000000000533c40
r27: 0x0000000000000001
r28: 0x0000000006908980 r29: 0x00000000a29557f4 r30: 0x0000000006908980
r31: 0x0000000092991028
Binary Images Description:
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Chemie-Programme/R 2.3.1/R.app/Contents/MacOS/R
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/Library/Frameworks/R.framework/Versions/2.3/Resources/lib/libgfortran.0.dylib
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/Library/Frameworks/R.framework/Versions/2.3/Resources/lib/libreadline.5.1.dylib
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/Library/Frameworks/R.framework/Versions/2.3/Resources/lib/libR.dylib
0x475c000 - 0x475efff net.culater.SIMBL 0.8 (8)
/Library/InputManagers/SIMBL/SIMBL.bundle/Contents/MacOS/SIMBL
0x588c000 - 0x58a8fff grDevices.so
/Library/Frameworks/R.framework/Versions/2.3/Resources/library/grDevices/libs/ppc/grDevices.so
0x596f000 - 0x59b5fff stats.so
/Library/Frameworks/R.framework/Versions/2.3/Resources/library/stats/libs/ppc/stats.so
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/Library/Frameworks/R.framework/Versions/2.3/Resources/library/methods/libs/ppc/methods.so
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/usr/lib/system/libmathCommon.A.dylib
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x9037a000 - 0x90734fff com.apple.CoreGraphics 1.258.30 (???)
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x907c1000 - 0x9089afff com.apple.CoreFoundation 6.4.6 (368.27)
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x908e3000 - 0x908e3fff com.apple.CoreServices 10.4 (???)
/System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x908e5000 - 0x909e7fff libicucore.A.dylib /usr/lib/libicucore.A.dylib
0x90a41000 - 0x90ac5fff libobjc.A.dylib /usr/lib/libobjc.A.dylib
0x90aef000 - 0x90b5dfff com.apple.framework.IOKit 1.4 (???)
/System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
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/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
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/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
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/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/WebServicesCore.framework/Versions/A/WebServicesCore
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/System/Library/Frameworks/Security.framework/Versions/A/Security
0x913ec000 - 0x913f5fff com.apple.DiskArbitration 2.1
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0x91446000 - 0x91466fff libmx.A.dylib /usr/lib/libmx.A.dylib
0x9146c000 - 0x91474fff libbsm.dylib /usr/lib/libbsm.dylib
0x91478000 - 0x914f3fff com.apple.audio.CoreAudio 3.0.3
/System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x91530000 - 0x91530fff com.apple.ApplicationServices 10.4 (???)
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x91532000 - 0x9156afff com.apple.AE 1.5 (297)
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x916a7000 - 0x91738fff com.apple.print.framework.PrintCore 4.5 (177.10)
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x9177f000 - 0x91836fff com.apple.QD 3.8.20 (???)
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
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/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x944a6000 - 0x944e3fff libsqlite3.0.dylib /usr/lib/libsqlite3.0.dylib
0x944eb000 - 0x9453bfff libGLImage.dylib
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x946de000 - 0x946edfff libCGATS.A.dylib
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x946f5000 - 0x94701fff libCSync.A.dylib
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x94707000 - 0x94726fff libPDFRIP.A.dylib
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libPDFRIP.A.dylib
0x94747000 - 0x9475ffff libRIP.A.dylib
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x95a79000 - 0x95b05fff com.apple.WebKit 418
/System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
0x95b60000 - 0x95c55fff com.apple.JavaScriptCore 417.11
/System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x95c91000 - 0x95f9bfff com.apple.WebCore 417.24
/System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
0x96123000 - 0x9614cfff libxslt.1.dylib /usr/lib/libxslt.1.dylib
0x9648d000 - 0x9648ffff com.apple.ExceptionHandling 1.2 (???)
/System/Library/Frameworks/ExceptionHandling.framework/Versions/A/ExceptionHandling
0x9748f000 - 0x974aefff com.apple.vecLib 3.2.1 (vecLib 3.2.1)
/System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
Problem three:
After the first installation of R, the TukeyHSD-Command works proper. Than,
after updating to Quicktime 7.1.1 and a crash of R, the TukeyHSD-Command
doesn't work anymore. Everytime i've got the message "syntax
error". But i do it in the same way like before.
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