similar to: PRESS / RMSEP

Dear R users, I am using "enet" package in R for applying "elastic net" method. In elastic net, two penalities are applied one is lambda1 for LASSO and lambda2 for ridge ( zou, 2005) penalty. But while running the analysis, I realised tht, I optimised only one lambda. ( even when I looked at the example in R, they used only one penality) So, I am

Dear R users,? ? ? ? ? ? ? ? ? ? ? ? ? I am using "Glmnet" package in R for applying "elastic net" method. In elastic net, two penalities are applied one is lambda1 for?LASSO and lambda2 for ridge ( zou, 2005) penalty.?How can I? write the code to? pre-chose the? lambda1 for?LASSO and lambda2 for ridge without using cross-validation Thanks in advance? Tayo? [[alternative

Unlike L1 (lasso) regression or elastic net (mixture of L1 and L2), L2 norm regression (ridge regression) does not select variables. Selection of variables would not work properly, and it's unclear why you would want to omit "apparently" weak variables anyway. Frank maths123 wrote > I have a .txt file containing a dataset with 500 samples. There are 10 > variables. > >

This update adds an intercept option (by popular request) - now one can fit a model without an intercept Glmnet is a package that fits the regularization path for a number of generalized linear models, with with "elastic net" regularization (tunable mixture of L1 and L2 penalties). Glmnet uses pathwise coordinate descent, and is very fast. The current list of models covered are:

This update adds an intercept option (by popular request) - now one can fit a model without an intercept Glmnet is a package that fits the regularization path for a number of generalized linear models, with with "elastic net" regularization (tunable mixture of L1 and L2 penalties). Glmnet uses pathwise coordinate descent, and is very fast. The current list of models covered are:

This is a new version of glmnet, that incorporates some bug fixes and speedups. * a new convergence criterion which which offers 10x or more speedups for saturated fits (mainly effects logistic, Poisson and Cox) * one can now predict directly from a cv.object - see the help files for cv.glmnet and predict.cv.glmnet * other new methods are deviance() for "glmnet" and coef() for

glmnet is a package that fits the regularization path for linear, two- and multi-class logistic regression models with "elastic net" regularization (tunable mixture of L1 and L2 penalties). glmnet uses pathwise coordinate descent, and is very fast. Some of the features of glmnet: * by default it computes the path at 100 uniformly spaced (on the log scale) values of the

glmnet is a package that fits the regularization path for linear, two- and multi-class logistic regression models with "elastic net" regularization (tunable mixture of L1 and L2 penalties). glmnet uses pathwise coordinate descent, and is very fast. Some of the features of glmnet: * by default it computes the path at 100 uniformly spaced (on the log scale) values of the

glmnet_1.2 has been uploaded to CRAN. This is a major upgrade, with the following additional features: * poisson family, with dense or sparse x * Cox proportional hazards family, for dense x * wide range of cross-validation features. All models have several criteria for cross-validation. These include deviance, mean absolute error, misclassification error and "auc" for logistic or

glmnet_1.2 has been uploaded to CRAN. This is a major upgrade, with the following additional features: * poisson family, with dense or sparse x * Cox proportional hazards family, for dense x * wide range of cross-validation features. All models have several criteria for cross-validation. These include deviance, mean absolute error, misclassification error and "auc" for logistic or

Hi all, I would greatly appreciate if someone was so kind and share with us a package or method that uses a regularized regression approach that balances a regression model performance and model complexity. That said I would be most grateful is there is an R-package that combines Ridge (sum of squares coefficients), Lasso: Sum of absolute coefficients and Best Subsets: Number of coefficients as

Hi, I want to calculate PLS package in R. Now I want to calculate R, MSEP, RMSEP and R2 of PLSR and PCR using this. I also add this in library of R. How I can calculate R, MSEP, RMSEP and R2 of PLSR and PCR in R. I s any other method then please also suggest me. Simply I want to calculate these value. Thanking you. -- Nitish Kumar Mishra Junior Research Fellow BIC, IMTECH, Chandigarh, India

Hi, I am trying to do logistic regression for data of 104 patients, which have one outcome (yes or no) and 15 variables (9 categorical factors [yes or no] and 6 continuous variables). Number of yes outcome is 25. Twenty-five events and 15 variables mean events per variable is much less than 10. Therefore, I tried to analyze the data with penalized regression method. I would like please some of the

Hi R-listers, I would like to know how can i extract component no. when the RMSEP is lowest? Currently, I only plot it manually and then only feed the ncomp to the jack knife command. However, I would like to automate this step. Please let me know. Many thanks. Rgrds, [[alternative HTML version deleted]]

Dear All The problem is about regularization methods in multiple regression when the independent variables are collinear. A modified regularization method with two tuning parameters l1 and l2 and their product l1*l2 (Lambda 1 and Lambda 2) such that l1 takes care of ridge property and l2 takes care of LASSO property is proposed The proposed method is given

Dear R-users, we are happy to announce the release of our R package parcor. The package contains tools to estimate the matrix of partial correlations based on different regularized regression methods: Lasso, adaptive Lasso, PLS, and Ridge Regression. In addition, parcor provides cross-validation based model selection for Lasso, adaptive Lasso and Ridge Regression. More details can be found

Dear R-users, we are happy to announce the release of our R package parcor. The package contains tools to estimate the matrix of partial correlations based on different regularized regression methods: Lasso, adaptive Lasso, PLS, and Ridge Regression. In addition, parcor provides cross-validation based model selection for Lasso, adaptive Lasso and Ridge Regression. More details can be found

Hi, I couldn't find a package to fit a penalized (lasso/ridge) Gamma regression model. Does anybody know any? Thanks in advance, Lars. [[alternative HTML version deleted]]

Dear R community, I'm curious to know how people go about estimating standard errors for parameter estimates after model selection by ridge regression and the lasso. Do you have any practical or theoretical advice? Warmly, Andrew -- Andrew Robinson Department of Mathematics and Statistics Tel: +61-3-8344-9763 University of Melbourne, VIC 3010 Australia Fax:

Hi, I am trying to understand the alternative methods that are available for selecting variables in a regression without simply imposing my own bias (having "good judgement"). The methods implimented in leaps and step and stepAIC seem to fall into the general class of stepwise procedures. But these are commonly condemmed for inducing overfitting. In Hastie, Tibshirani and Friedman