similar to: A question regarding bootstrap

Displaying 20 results from an estimated 2000 matches similar to: "A question regarding bootstrap"

2012 Dec 04
2
computing marginal values based on multiple columns?
Hello all, I have what feels like a simple problem, but I can't find an simple answer. Consider this data frame: > x <- data.frame(sample1=c(35,176,182,193,124), sample2=c(198,176,190,23,15), sample3=c(12,154,21,191,156), class=c('a','a','c','b','c')) > x sample1 sample2 sample3 class 1 35 198 12 a 2 176 176
2011 Sep 26
1
How to Store the executed values in a dataframe & rle function
Hi group, This is how my test file looks like: Chr start end sample1 sample2 chr2 9896633 9896683 0 0 chr2 9896639 9896690 0 0 chr2 14314039 14314098 0 -0.35 chr2 14404467 14404502 0 -0.35 chr2 14421718 14421777 -0.43 -0.35 chr2 16031710 16031769 -0.43 -0.35 chr2 16036178 16036237 -0.43 -0.35 chr2 16048665 16048724 -0.43 -0.35 chr2 37491676 37491735 0 0 chr2 37702947 37703009 0 0
2011 Aug 14
2
conditional filter resulting in 2 new dataframes
This is what I am starting with: initial<- matrix(c(1,5,4,8,4,4,8,6,4,2,7,5,4,5,3,2,4,6), nrow=6, ncol=3,dimnames=list(c("1900","1901","1902","1903","1904","1905"), c("sample1","sample2","sample3"))) And I need to apply a filter (in this case, any value <5) to give me one dataframe with only the
2012 Jul 31
2
phantom NA/NaN/Inf in foreign function call (or something altogether different?)
Dear experts, Please forgive the puzzled title and the length of this message - I thought it would be best to be as complete as possible and to show the avenues I have explored. I'm trying to fit a linear model to data with a binary dependent variable (i.e. Target.ACC: accuracy of response) using lrm, and thought I would start from the most complex model (of which "sample1.lrm1" is
2010 Sep 07
1
average columns of data frame corresponding to replicates
Hi Group, I have a data frame below. Within this data frame there are samples (columns) that are measured more than once. Samples are indicated by "idx". So "id1" is present in columns 1, 3, and 5. Not every id is repeated. I would like to create a new data frame so that the repeated ids are averaged. For example, in the new data frame, columns 1, 3, and 5 of the original
2007 May 10
1
how to pass "arguments" to a function within a function?
I have searched the r-help files but have not been able to find an answer to this question. I apologize if this questions has been asked previously. (Please excuse the ludicrousness of this example, as I have simplified my task for the purposes of this help inquiry. Please trust me that something like this will in fact be useful what I am trying to accomplish. I am using R 2.4.1 in Windows XP.)
2012 Mar 29
1
Random sample from a data frame where ID column values don't match the values in an ID column in a second data frame
Hello, Let's say I've drawn a random sample (sample1.df) from a large data frame (main.df), and I want to create a second random sample (sample2.df) where the values in its ID column *are not* in the equivalent ID column in the first sample (sample1.df). How would I go about doing this? In other words: The values in sample2.df$ID *are not found* in sample1.df$ID, and both samples are
2010 Nov 04
2
Converting Strings to Variable names
Hi all, I am processing 24 samples data and combine them in single table called CombinedSamples using following: CombinedSamples<-rbind(Sample1,Sample2,Sample3) Now variables Sample1, Sample2 and Sample3 have many different columns. To make it more flexible for other samples I'm replacing above code with a for loop: #Sample is a string vector containing all 24 sample names for (k in
2008 Oct 16
1
apply, t-test and p-values
R 2.7.2 Windows XP I am using apply to compute a series of Student's t-test from two matrices, sample1 and sample2. boo<-apply(sample1,1,t.test,sample2) I want to pick of the p-values from the tests, but can't seem to get it to work. I have tried several methods to get the values including: boo<-apply(sample1,1,t.test$t.test,sample2) boo<-apply(sample1,1,t.test,sample2)$t.test
2009 Sep 16
2
T-test to check equality, unable to interpret the results.
Hi, I have the precision values of a system on two different data sets. The snippets of these results are as shown: sample1: (total 194 samples) 0.6000000238 0.8000000119 0.6000000238 0.2000000030 0.6000000238 ... ... sample2: (total 188 samples) 0.80000001 0.20000000 0.80000001 0.00000000 0.80000001 0.40000001 ... ... I want to check if these results are statistically significant? Intuitively,
2006 Jun 29
1
kmeans clustering
Hello R list members, I'm a bio informatics student from the Leiden university (netherlands). We were asked to make a program with different clustering methods. The problem we are experiencing is the following. we have a matrix with data like the following research1 research2 research3 enz sample1 0.5 0.2 0.4 sample2 0.4
2008 May 21
2
Problem in converting natural numbers to bits and others
Hi, I just started using R for about one week and I have few problems. i)I have a problem in finding right function to convert a table of natural numbers to bitwise. For a simple example; I have the below table:- Column Col1 Col2 Col3 Sample1 5 7 10 Sample2 0 2 1 Sample3 4 0 0 Supposedly i wanted to convert to :- Column Col1 Col2 Col3
2011 Mar 26
2
simple if question
Hi everyone, I have just got different samples from a dataframe (independent and exclusive, there aren't common elements among them). I want to create a variable that indicate the sampling selection of the elements in the original dataframe (for example, 0 = no selected, 1= sample 1, 2=sample 2, etc.). I have tried to do it with ifelse command, but the problem is that the second line
2010 Jun 13
1
using latticeExtra plotting confidence intervals
I am wanting to plot a 95% confidence band using segplot, yet I am wanting to have groups. For example if I have males and females, and then I have them in different races, I want the racial groups in different panels. I have this minor code, completely made up but gets at what I am wanting, 4 random samples and 4 samples of confidence, I know how to get A & B into one panel and C&D in to
2010 May 21
2
Data reconstruction following PCA using Eigen function
Hi all, As a molecular biologist by training, I'm fairly new to R (and statistics!), and was hoping for some advice. First of all, I'd like to apologise if my question is more methodological rather than relating to a specific R function. I've done my best to search both in the forum and elsewhere but can't seem to find an answer which works in practice. I am carrying out
2011 Jan 20
1
Problems with ecodist
Dear Dr.Goslee and anyone may intrested in matrix manipulate, I am using your ecodist to do mantel and partial mantel test, I have locality data and shape variation data, and the two distance matrixs are given as belowings. When I run the analysis, it is always report that the matrix is not square, but I didn't know what's wrong with my data. Would you please help me on this. I am quite
2012 Apr 27
3
kiteChart to show real values with scalebar
Dear R-users I hope someone could help me on this problem. I want to create a multiple kiteChart showing the real values with a scalebar on each indicating the scale . Here are some sample data to show what I want to achieve. Y <- read.table(textConnection("Sample1 Sample2 60 20 150 50 300
2010 Nov 02
2
One question on heatmap
Dear R-helper: Suppose we have a matrix: Gene sample1 sample2 Gcnt1 12.0000 52.80000 Max 8.8000 39.10000 Tmem176b 67.9000 304.70000 Shmt2 8.6000 42.40000 Rtn4 11.5000 57.70000 Il17re 7.6000 38.80000 Bclp2 6.2000 32.10000 Mobkl3 4.4000 32.20000 Akr1b10 3.4000 30.10000
2011 Apr 15
3
Monte Carlo Simulation
Hello, R friends... I am very new to R, and I need some help. I am trying to construct a simulation for my dissertation. I need to create 1000 datasets of 1000 subjects with the following variables... Treatment variable - Drawn from a binomial distribution (1 run, prob=.13) Covariate 1 - Drawn from a normal distribution (mean=100, sd=16) Covariate 2 - Drawn from a normal distribution
2011 Sep 15
2
R functions
Hi group, I am trying to right a code to do the following This is how the test file looks like: Chr start end sample1 sample2 chr2 9896633 9896683 0 0 chr2 9896639 9896690 0 0 chr2 14314039 14314098 0 -0.35 chr2 14404467 14404502 0 -0.35 chr2 14421718 14421777 -0.43 -0.35 chr2 16031710 16031769 -0.43 -0.35 chr2 16036178 16036237 -0.43 -0.35 chr2 16048665 16048724 -0.43 -0.35 chr2 37491676 37491735