similar to: OT: Adding verbatim R code text into LaTeX documents: texttt; verb or url?

the problem is a little hard to explain; the .Rnw files (below) probably do a better job, but here goes ... Sweave doesn't like it when i size a graphical device in a code chunk using either, e.g.: windows(width=20, height=5) in Windows, or, e.g. x11(width=20, height=5) under X, when i then plot something in said device and try to include this graphical output in the resulting

Hi all I am preparing a document using Sweave; a really useful tool. But I am having a problem. Consider this toy example Sweave file: \documentclass{article} \begin{document} <<echo=TRUE,results=verbatim>>= options(width=40) # Set width to 40 characters hide <- capture.output(example(glm)) # Create an example of the problem, but hide the output summary(glm.D93) #

Dear expeRts, What's a 'good' (nice-looking, easy-to-read) setup for the LaTeX package 'listings' to display R code? The two versions below are partly inspired by the settings of the package SweaveListingUtils and http://r.789695.n4.nabble.com/R-How-to-format-R-code-in-LaTex-documents-td816055.html Any suggestions, comments, or improvements are welcome. Cheers, Marius ###

Hi all I was playing with termplot(), and came across what appears to be an inconsistency. It would appreciate if someone could enlighten me: > # First, generate some data: > y <- rnorm(100) > x <- runif(length(y),1,2) > # Now find the log of x: > logx <- log(x) > > # Now fit two models that are exactly the same, but specified differently: > m1 <-

Hi, I am planning on putting some R script in an appendix of a LaTex document. Can anyone recommend me a way of how to format it? Is there a way to keep all line breaks without having to insert \\ in every single line? Thank you! Benjamin

Hi all Consider the family function, as used by glm. The help page says the value of the family object is a list, one element of which is the following: dev.resids function giving the deviance residuals as a function of (y, mu, wt). But reading any of the family functions (eg poisson) shows that dev.resids is a function that computes the *square* of the deviance residuals (at least, by

Here is the file minimal.Snw: \documentclass[a4paper]{article} \title{R tips and tricks} \author{Murray Jorgensen} \usepackage{Sweave} \begin{document} \maketitle \section*{Entering data from a single variable} The following data are transformed tensile strength measurements on polyester fibres. They may be found on the file \texttt{TENSILE.DAT}. We may enter this data into R using the

I am using R 2.5 on a Linux Redhat platform. I can successfully run some example *.Rnw files through Sweave and generate pdf files. When I try my own example file, "test.Rnw": \documentclass[a4paper]{article} \title{Test Sweave Example} \author{Thomas Adams} \begin{document} \maketitle In this example we embed parts of the examples from the \texttt{boxplot} and \texttt{lattice}

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

Surprisingly this invalid latex syntax is still formatted "right" in the html output. On a closer look it seems like roxygen2 introduces those, when using markdown backtick quoting, if the quoted content is not syntactic. For instance: #' `c(c(1)` #' `c(c(1))` Will convert the first line to `\verb{c(c(1)}` and the second to `\code{c(c(1))}`. I've opened a ticket there FYI:

Do I understand correctly that we don't want Rd files to be valid latex ? This seems odd to me. I see that `tools::parse_Rd()` doesn't like `\verb!foo!` so maybe roxygen2 is actually doing the right thing (as opposed to just trying to) ? `parse_Rd() ` is probably what I need indeed, for some reason I hadn't found it, so that should fix my own issue here thanks a lot. Le ven. 21 juil.

Wow. I wasn't expecting such a voluminous reply -- some I agree with and some I don't. My apologies for an equally voluminous reply. On Wed, 19 Dec 2007, Tony Plack wrote: > > We're not discussing code or the inner workings of Asterisk or even > > changing the functionality of Asterisk, just what the proper order of > > the words should be. > > > >

? Fri, 21 Jul 2023 15:14:09 +0200 Antoine Fabri <antoine.fabri at gmail.com> ?????: > On a closer look it seems like roxygen2 introduces those, when using > markdown backtick quoting, if the quoted content is not syntactic. For > instance: > > #' `c(c(1)` > #' `c(c(1))` > > Will convert the first line to `\verb{c(c(1)}` and the second to >

Back on 18-June a colleague (Earl Glynn) asked: ================== I did a ?package.contents in version 1.9.0. The help file says this is deprecated, and says to "see also" Deprecated and Defunct, but what is the "new" function that replaces packge.contents? The function still seems to work, but it's just tagged as deprecated. efg ================== I have the

Hi all I've been getting some emails from the R package maintainers that I need to update some code in a CRAN packge that uses FORTRAN, to comply with (not so recent) changes. I've been a little busy... I'm having trouble adjusting my code. I hope someone can help. The package was working fine, and a few R functions in my package had lines like this: tmp <- .Fortran(

Hi there, I'm rying to 'turn' an Schunk in an .Rnw file(Xemacs-21.4.13, ESS-5.2.8, R-2.1, miktex-2.4.1705). Has anyone got the isorot package to work with Sweave? JC example test.Rnw: \documentclass[a4paper]{article} \usepackage{Sweave} \usepackage{isorot} \rotdriver{dvips} \clockwise \title{Sweave Example 1} \author{apologies to Friedrich Leisch } \begin{document} \maketitle

Hi all, I've got a basic question regarding package documentation and rd.sty. I wrote my first own package, and now I would like to place the documentation into the appendix of another LaTex document. Seemingly I cannot simply \usepackage{Rd}, as this will modify the page-settings of my document. Is there a minimum style file which will just define the environments and commands needed for

I am having trouble converting the output from Sweave into a valid PDF file. I have created a simple .Rnw file which will become a full vignette at some point, but during the intermediate testing, I got errors from texi2dvi. This is what I have done. 0) Using a Windows Xp system 1) Created a file called GeneSpring.Rnw 2) Convert this to Tex using Sweave("GeneSpring.Rnw") from within R

Hi All, I've reproduced the example from Prof. Friedrich Leisch's webpage. When I write sweave("Example-1.Snw") OR sweave("Example-1.Rnw"), (yes, I renamed them). I get the following error: Writing to file example-1.tex Processing code chunks ... 1 : echo term verbatim Error: chunk 1 Error in library(ctest) : there is no package called 'ctest' Also while

Hi all I'm having a problem when using Sweave. Here is a minimal example. My input file (eg, test.Snw) looks like this: <<TESTME,echo=FALSE, results=hide,fig=FALSE,keep.source=TRUE>>= data(cars) m1 <- lm( dist~speed, data=cars ); coef( m1 ) @ <<echo=TRUE,results=verbatim,fig=FALSE,keep.source=TRUE>>= <<TESTME>> @ <<TESTME2,echo=FALSE,