similar to: Warning message:In pt(q, df, lower.tail, log.p) : NaNs produced

Hi friends, If someone can find out some time to go through my problem would be really grateful. I have a dataset(dataset1) as shown below:-- recmeanC1 recmeanC2 recmeanC3 recmeanC4 i1 i2 i3 i4 i5 i6 i7 i8 i9 i10 i11 1 NA 1 1.00 1.800000 NA 1 NA 1 1 NA 2 2 2 NA 2 2 2 2 1.00

---------- Forwarded message ---------- From: Moumita Das <das.moumita.online@gmail.com> Date: Sat, May 16, 2009 at 2:26 PM Subject: Cannot allocate a new database connection error To: r-help-request@r-project.org Hi friends, why do i keep getting this error?The program runs, twice and every third time i get this error.I have to quit.Again get teh R-prompt and then run the script. *Error

inputfille snpid indid genotype gvariable probeid gene geneexpression rs1040480 CHB_NA18524 C/T 2 GI_19743926-I PTPRT 5.850586 rs1040480 CHB_NA18526 C/C 1 GI_19743926-I PTPRT 6.028641 rs1040480 CHB_NA18529 C/C 3 GI_19743926-I PTPRT 5.944392 rs1040481 CHB_NA18532 C/C 1 GI_19743926-I PTPRT 5.938578 rs1040481 CHB_NA18537 C/C 2 GI_19743926-I PTPRT 5.874439 rs1040481 CHB_NA18540 C/C 3 GI_19743926-I

Hi friends, I have a query regarding na.omit function.Please ,someone help me. I have a function xyz_function<-function(arguments) { some code return(list(matrix=dataset)) } xyz_function_returnvalue<-xyz_function(passed argumentss) *Case-I* xyz_function_returnvalue_deletingNArows<-na.omit((xyz_function_returnvalue)) *Case-II*

Hi All, Wanted to add some more information ,regarding my problem. configuration of teh OS and R:--- Linux 2.6.18-6-686 > R.Version() $platform [1] "i486-pc-linux-gnu" $arch [1] "i486" $os [1] "linux-gnu" $system [1] "i486, linux-gnu" $status [1] "Patched" $major [1] "2" $minor [1] "4.0" $year [1] "2006"

Hi all, Can anyone suggest me how to insert rows in between data frames and also keep the ordering of row numbers correct? Estimate Std. Error t value Pr(>|t|) recmeanC2 9.275880e-17 6.322780e-17 1.467057e+00 0.14349903 recmeanC3 1.283534e-17 2.080644e-17 6.168929e-01 0.53781390

Hi friends, Please can anyone help me with an easier solution of doing the below mentioned work. Suppose i have a dataset like this:--- i1 i2 i3 i4 i5 1 7 13 1 2 2 8 14 2 2 3 9 15 3 3 4 10 16 4 4 5 11 17 5 5 6 12 18 6 7 *i1,i2,i3,i4,i5 are my items.I am able to find all possible pairs i.e Say this dataframe is "item_pairs" **i1,i2 **i1,i3 **i1,i4 i1,i5 **i2,i1

I need help creating a bubbleplot, like a simple pseudo three dimensional scatterplot of circles whose sizes index a 3rd variable. I initially came across this at http://addictedtor.free.fr/graphiques/graphcode.php?graph=73 but the circleplot function does not exist in fbasic as listed in the document. _________________________________________________________________

I get this error while computing partial correlation. *Error in solve.default(Szz) : system is computationally singular: reciprocal condition number = 4.90109e-18* Why is it?Can anyone give me some idea ,how do i get rid it it? This is the function i use for calculating partial correlation. pcor.mat <- function(x,y,z,method="p",na.rm=T){ x <- c(x) y <- c(y)

Hi All, How do you dynamically generate the arguments for the lm() function when your items vary for each database. Say in my case for a particular database i have items from i1 to i15 . In the code below there a line like this :-- item_cat_fit<-lm(as.numeric(item_item_table$i1) ~ as.numeric(item_item_table$i2) + as.numeric(item_category_table$i3) ) *# this gives proper results,i am

Hello, I am trying to use self created functions in other scripts than the one where they are stored. For the moment I am using the following structure of commands to do that: 1. Load the text file with the functions in the current script: x=parse("path") 2. transform the tex in a function: f1=eval(x[1]), f2=eval(x[2]) if more than one function is stored in the text file 3. use the

Hi All, Would be grateful,if anyone can answer my queries. I need to share code. For example, if I am working in C/C++, I would put some function declarations in .h files that you would include. In PHP, I would create files with the common functions in them and then "include()" them. So far, I haven't been able to figure out what the standard practice is in R. The two options

Hi All , Can anybody tell me if there's any way to get the summarized anova values.Now i will explain what i mean , when i say "*summarized*". Below you can see the anova table of recmeanC1 with rest* all* i.e from recmeanC2 to i15(predictors),as shown in table. Df Sum Squares Mean Square F value Significance [Pr(>F)] recmeanC2 1 89.272 89.272

Hi All, How do i calculate KMO for a dataset? *Dataset:---------------------* m1 m2 m3 m4 m5 m6 m7 m8 1 2 20 20 2 1 4 14 12 2 9 16 3 5 2 5 5 15 3 18 18 18 13 17 9 2 4 4 7 7 2 12 2 11 11 11 5 7 8 5 19 5 2 20 18 6 7 4 7 4 7 9 3 3 7 5 5 5 12 5 13 13 12 8 6 6 4 3 5 17 17 16 9 12 12 4 2 4 4 14 14 10 5 14

Hi Everyone, I want to get the commands history as a character vector instead of just displaying them, but the function history() just returns NULL. I checked the source code of 'history' and could not find a solution. Anybody has an idea? Thanks! P. S. My original problem is, when a user opens a graphics device like png() or pdf(), I want to know the file name used by this device. I

I have two variables (x,y) : x : it takes all integer values from 0 to y and, y : takes all values from 0, 10 I am looking for some R code to find all possible pairs of (x,y). Can anyone please help me? New Email addresses available on Yahoo! Get the Email name you&#39;ve always wanted on the new @ymail and @rocketmail. Hurry before someone else does! [[alternative HTML version

I am generating a report containing several R scripts in the appendix. Is there any way to "beautify" the R source codes in microsoft word, similar to what we see in tinn-R ? Thanks _________________________________________________________________ [[alternative HTML version deleted]]

Hello All, I am using Tinn-R (v 2.0.0.7) integrated with R (v 2.7.2) on a 32-bit Windows Vista system. When I try to run a code and send it to R from Tinn-R, I get the following error message; ?Error in source(.trPaths[5], echo = T) : object ".trPaths" not found? I was using an earlier version of Tinn-R and R and I was not having problems till recently when R-sending started freezing

Dear R-users, I have a couple of questions about the relsurv package: 1) when I try to run the example: fit <- rsmul(Surv(time,cens)~sex+as.factor(agegr)+ratetable(age=age*365.24,sex=sex,year=year),ratetable=slopop,data=rdata) with the datasets in the package (rdata and slopop) it gives me an error: Error in nrow(x) : object "x" not found 2) If I have a date format

Respected Sir, With reference to my mail to you dated 8th January,2013, and the reply by you dated 9th January, 2013, I am sending this mail to you. I had a problem regarding running a program in the latest version of the "BRugs" package in R 2.15.1 and 2.15.2. I want to mention here that this program runs well to others, who are running it using the earlier version