similar to: command Polygenic gives error message concerning dimensions of data

Dear R developers: I am a PHD candidate student in the school of public health of Peking University and my major is genetic epidemiology. I am learning the FAM-MDR algorithm, which is used to detect the gene-gene and gene-environment interactions in the data of pedigree. The codes were written by Tom Cattaert of the University of Liege. The algorithms and the sample datasets are available at

I have a few questions about GenABEL, gwaa data. 1) is there a universal way that most GenABEL people use to add more individuals into a 'gwaa' data? For example, I have a 'gwaa' data, but I need to add some dummy parents, for 'gwaa at phdata', it's easy to add these rows, but for 'gwaa at gtdata', I think I need to create SNP data as '0 0 0 0 0.....'

Dear R experts I was using kinship package to fit mixed model with kinship matrix. The package looks like lme4, but I could find a way to extract p-value out of it. I need to extract is as I need to analyse large number of variables (> 10000). Please help me: require(kinship) Generating random example data id <- 1:100 dadid <- c(rep(0, 5), rep(1, 5), rep(3, 5), rep(5, 5), rep(7,

I am making the question clear. Please help. > Dear R experts > > I was using kinship package to fit mixed model with kinship matrix. > The package looks like lme4, but I could find a way to extract p-value > out of it. I need to extract is as I need to analyse large number of > variables (> 10000). > > Please help me: > > require(kinship) > > #Generating

Hi, I'm using kinship2 to calculate heritabilty, but I would like calculate in GenABEL too. I trying the code: > require(kinship2) > require(GenABEL) > pedig = with(Dados, pedigree(id=IID, dadid=PAT, momid=MAT, sex=SEX, famid=FID, missid=0)) > kmat = kinship(pedig) > (mod1 = polygenic(altura ~ SEX + idade, data=Dados, kin=kmat)) Erro em intI(i, n = d[1],

Dear Samba developers, We have an unexpected problem with Samba in Combination with M$ Terminal Server. Setup: ------ - Terminal Server with Office Applications (MS-Word, ...) used by multiple concurrent users (30) - Linux box with Samba 2.0.6 as print / fax server Goal: ----- - To send FAXes from Office applications How we did it: -------------- in smb.conf: [fax] comment = FAX Service

Hi all! I am using GenABEL on R for GWAS analysis. I am having a couple of issues: First, I am having a problem reading files (.map, & .ped, size 900Mb, using windows 32-bit) onto R in the "convert.snp.ped" statement. I am thinking this problem is likely due to the large size of the files & my version of R is not able to handle them, since I can read in smaller files.

Hi, I am using a function 'polygenic' in the package called 'GenABEL'. -------------------------------------------------------------------------------- > h2.gs <- polygenic(b.dbp~age+age2+age3+sex+b.bmi, kin=gs.gkin, data=gs) ------------------------------------------------------------------------------- ## and I got the following error message: Error in svd(X): infinite or

Our Global Configuration is as follows: #======================= Global Settings ======================= [global] workgroup = WIKIMEDIA netbios name = THEWIGGLE server string = %h server (Samba, Ubuntu) security = user dns proxy = no #### Debugging/Accounting #### log level = 2 log file = /var/log/samba/log.%m max log size = 1000 syslog = 0 panic action =

How to make the gwaa.data file I have the genotype data in plink format As binary and as text file Can anyone assist me ? [[alternative HTML version deleted]]

On 15/12/15 21:16, Byron Bogaert wrote: > Hi Rowland, > > We need to change the SID on a standalone server because it needs to > also act as a File Server. The authentication comes from LDAP, and we > have existing entries in LDAP for SID of the domain. Instead of change > all the SID in ldap, we would like to be able to change it on the server. > > Hope this helps. >

hello!! i'm starting with R and i have some big problems:when i try to take a notepad document (or word) i can't put it into R!!!! i tried : read.table("nameofmyfile.dat") but it doesn't work!!!!! my computer says:error in file(file, "r"): cannot open file "nameofmyfile" I think i have to save my notepad file on another location....can u help me????? thank

Currently IRQs routing is initialized to the wrong register and overwrites interrupt configuration register (ICFGRn). Reported-by: Sander Bogaert <sander.bogaert@elis.ugent.be> Signed-off-by: Julien Grall <julien.grall@linaro.org> --- Changes in v2: - cpumask was already good... --- xen/arch/arm/gic.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git

Hi Marc, We are running Samba Version 4.1.6-Ubuntu on Ubuntu 14.04 LTS. Is there any other specific information you need? Thanks, Byron -- *Byron Bogaert* *IT System Administrator* Wikimedia Foundation Imagine a world in which every single human being can freely share in the sum of all knowledge. Help us make it a reality! https://donate.wikimedia.org On Tue, Dec 15, 2015 at 12:53 PM, Marc

Hi Marc, I tried using Samba version 4.3 without much success. I still was not able to control what the local sid of the machine was. To install 4.3 on Ubuntu 14.04 LTS I needed to use the following ppa: https://launchpad.net/~bnd-acc/+archive/ubuntu/samba43 I also tried changing to the smb.conf to "SERVER ROLE = CLASSIC PRIMARY DOMAIN CONTROLLER on my 4.1.6 and 4.3 version. This also did

Hi Rowland, We need to change the SID on a standalone server because it needs to also act as a File Server. The authentication comes from LDAP, and we have existing entries in LDAP for SID of the domain. Instead of change all the SID in ldap, we would like to be able to change it on the server. Hope this helps. Thanks, Byron -- *Byron Bogaert* *IT System Administrator* Wikimedia Foundation

Hi Marc, We are working on building a Standalone Samba server on Ubuntu 14.04 LTS. Thanks, Byron On Dec 15, 2015 5:12 AM, "Marc Muehlfeld" <mmuehlfeld at samba.org> wrote: > Hello Byron, > > Am 14.12.2015 um 23:47 schrieb Byron Bogaert: > > I am trying to change the localSID for a SAMBA server, however I am > unable > > to. I have tried the command

Hi all! I am desperately trying to figure out the solution to this error, but nothing as of yet is working. As noted in an earlier post I am using GenABEL. In an attempt to read in the phenotype file, in the format .dat, R keeps giving me the error "more columns than column names" I have tried to read in the data without the headers; I have also tried to trim the data to remove any

I am trying to change the localSID for a SAMBA server, however I am unable to. I have tried the command "net setlocalsid" to no avail. To troubleshoot I have also stopped the smbd and nmbd services, but this did not help. Any help would be great! root at TheWiggle:~# net getlocalsid SID for domain THEWIGGLE is: S-1-5-21-748580849-194208185-3916830000 root at TheWiggle:~# net

Hi Tetra, This is the way we are currently looking at building our SAMBA file server. The reason why we would like to change the SID on the SAMBA server is so we do not need to change all the existing entries in ldap to be SID + rid. -Byron -- *Byron Bogaert* *IT System Administrator* Wikimedia Foundation Imagine a world in which every single human being can freely share in the sum of all