Displaying 15 results from an estimated 15 matches similar to: "glm error message when using family Gamma(link="inverse")"
2009 Dec 31
4
Obtaining partial output from a function that does not run to completion.
I have written a function that contains runs
lm()
vif() and
glm()
When the glm() blows up with an error message, I don't get the output from either the lm() or vf() even thought neither lm() nor vif() have any problems . How can I force the function to print sequential results rather than wait for the entire function to complete before listing the functhion's output?
Thanks,
John
2011 Oct 28
4
Contrasts with an interaction. How does one specify the dummy variables for the interaction
Forgive my resending this post. To data I have received only one response (thank you Bert Gunter), and I still do not have an answer to my question.
Respectfully,
John
Windows XP
R 2.12.1
contrast package.
I am trying to understand how to create contrasts for a model that contatains an interaction. I can get contrasts to work for a model without interaction, but not after adding the
2012 Oct 25
2
How to extract auc, specificity and sensitivity
I am running my code in a loop and it does not work but when I run it
outside the loop I get the values I want.
n <- 1000; # Sample size
fitglm <- function(sigma,tau){
x <- rnorm(n,0,sigma)
intercept <- 0
beta <- 0
ystar <- intercept+beta*x
z <- rbinom(n,1,plogis(ystar))
xerr <- x + rnorm(n,0,tau)
model<-glm(z ~ xerr, family=binomial(logit))
2012 Oct 20
1
Logistic regression/Cut point? predict ??
I am new to R and I am trying to do a monte carlo simulation where I
generate data and interject error then test various cut points; however, my
output was garbage (at x equal zero, I did not get .50)
I am basically testing the performance of classifiers.
Here is the code:
n <- 1000; # Sample size
fitglm <- function(sigma,tau){
x <- rnorm(n,0,sigma)
intercept <- 0
beta
2012 Oct 26
0
Problems getting slope and intercept to change when do multiple reps.
library(ROCR)
n <- 1000
fitglm <- function(iteration,intercept,sigma,tau,beta){
x <- rnorm(n,0,sigma)
ystar <- intercept+beta*x
z <- rbinom(n,1,plogis(ystar))
xerr <- x + rnorm(n,0,tau)
model<-glm(z ~ xerr, family=binomial(logit))
*int*<-coef(model)[1]
*slope*<-coef(model)[2] # when add error you are suppose to get slightly
bias slope. However when I change
2011 Oct 28
2
Thank you
Dear r-community,
Today I have completed my PhD. I would like to take this opportunity to thank the r-community for helping me with the r-coding. I use r to do data manipulation during my PhD and I benefit a lot through the discussion in the r-forum.
I will continue using R and help the others too.
Thank you so much.
Regards,
Roslina
UniSA.
[[alternative HTML version deleted]]
2010 Jan 02
1
Help with tryCatch
Windows XP
R 2.8.1
Colleagues,
I am trying to run a function testone() and if the function completes without error do one set of instructions, and if the function generates either a warning or an error run another set of instructions. I have read try, and tryCatch help screens at least 20 times, have tried to experiment with code, but I can't understand how to accomplish my desired task.
2008 Jan 05
2
Behavior of ordered factors in glm
I have a variable which is roughly age categories in decades. In the
original data, it came in coded:
> str(xxx)
'data.frame': 58271 obs. of 29 variables:
$ issuecat : Factor w/ 5 levels "0 - 39","40 - 49",..: 1 1 1 1...
snip
I then defined issuecat as ordered:
> xxx$issuecat<-as.ordered(xxx$issuecat)
When I include issuecat in a glm model, the result
2004 Aug 06
2
New YP listing code in icecast2
I have just committed this code to CVS, and here is more information about
it for those interested :
- the spec that I went off of for the protocol can be found here ->
http://www.oddsock.org/icecast2yp/spec.html
- since icecast2 now needs to potentially connect out to yp servers for
communication, libcurl has been added as a dependency...I used curl 7.9.8...
- I also have currently
2011 Jan 21
3
Function comparable to cutpt.coxph from "Survival Analysis using S"
Dear Mrs Rachel Pearce,
I am looking for a function "cutpt-coxph" in R - like you did some years ago.
How have you solved the problem? Have you found it or a similar function?
thank you, Sincerely, Friederike
"The title says it all really; I am looking for a function along the lines of
cutpt.coxph as described in "Survival Analysis Using S" (Tableman and
Kim), Chapter
2004 Aug 06
0
New YP listing code in icecast2
On Sun, 2 Feb 2003, oddsock wrote:
| I have just committed this code to CVS, and here is more information about
| it for those interested :
This is great!
But I have a few wonderings:
I'm suprised that the HTTP/GET method of notifying YP servers is still
preferred. According to this protocol, we're still limited to essentially
title/author, listeners, etc. In other words, we're
2004 Aug 06
1
New YP listing code in icecast2
At 01:26 PM 2/2/2003 -0500, you wrote:
>I'm suprised that the HTTP/GET method of notifying YP servers is still
>preferred. According to this protocol, we're still limited to essentially
>title/author, listeners, etc. In other words, we're still constrained by
>what information is accepted by the YP server.
>
>I've been thinking that a more XML-like approach could
2009 Dec 28
0
[storage-discuss] high read iops - more memory for arc?
Pre-fletching on the file and device level has been disabled yielding good results so far. We''ve lowered the number of concurrent ios from 35 to 1 causing the service times to go even lower (1 -> 8ms) but inflating actv (.4 -> 2ms).
I''ve followed your recommendation in setting primarycache to metadata. I''ll have to check with our tester in the morning if it made
2009 Dec 24
1
high read iops - more memory for arc?
I''m running into a issue where there seems to be a high number of read iops hitting disks and physical free memory is fluctuating between 200MB -> 450MB out of 16GB total. We have the l2arc configured on a 32GB Intel X25-E ssd and slog on another32GB X25-E ssd.
According to our tester, Oracle writes are extremely slow (high latency).
Below is a snippet of iostat:
r/s w/s
2011 Nov 11
2
Estimating IRT models by using nlme() function
Hi,
I have a question about estimating IRT models by using nlme, not just rasch
model, but also other models.
Behavior Research Methods
<http://www.springerlink.com/content/1554-351x/> Volume
37, Number 2 <http://www.springerlink.com/content/1554-351x/37/2/>, 202-218,
DOI: 10.3758/BF03192688
Using SAS PROC NLMIXED to fit item response theory models (2005). Ching-Fan