similar to: Nested Clade Analysis

Dear list, I am trying to replace Unicode notation of German and Spanish special characters (as read in by read.csv from excel spreadsheets) by character strings that can be interpreted by LaTeX. E.g.: uni2latex <- function(x){ x <- gsub("&", "et", x, fixed = TRUE) # Deutsch x <- gsub("\u0080", "\\\"A", x, fixed = TRUE) x

Hello, anybody know the procedure to plot the geneland result in a map? thank you ********************************************************** Vincenzo Landi Post Doctorate student Animal genomic and breeding cell:0039/3395388713 Fax. 075-5857122 [[alternative HTML version deleted]]

Dear all, I was testing the wonderful package APE. However upon testing a particular Newick's format tree - which I think to be a non-binary tree - it yields different result as expected. > library(ape) > tree.hiv <- read.tree(text="(rat,mouse,(human,chimp));") > is.binary.tree(tree.hiv) [1] TRUE Was that a bug in APE package? - Gundala Viswanath Jakarta - Indonesia

Dear list, After searching many old posts, I can't find the solution to a simple problem. can someone tell me how to create a character string with multiple backslashes, as in: file_dir <- c("C:\files\data\") I need to create this string and then paste it to many files names for batch processing in another software program. R won't accept the backslash and removes

Dear list, I want to run latex from an R script: system("latex mysource.tex") or: texi2dvi("mysource.tex", pdf = TRUE, clean = FALSE, quiet = TRUE, texi2dvi = latex) but latex does not seem to be on the search path: /bin/sh: line 1: latex: command not found. Although 'printenv PATH' tells me that the usr/texbin is looked for executables:

I do the these passages: library(Geneland) set.seed(1) data <- simdata(nindiv=200, coord.lim=c(0,1,0,1) , number.nuclei=5 , allele.numbers=rep(10,20), IBD=FALSE, npop=2, give.tess.grid=FALSE) geno <- data$genotypes coord <- t(data$coord.indiv) path.mcmc <-

Hi, I was recently splitting some massive phylo class objects with extract.clade() and noticed what appears to be a bug in how tip labels are copied from the full tree to the pruned tree. This possible bug was also mentioned here: http://www.mail-archive.com/r-sig-phylo at r-project.org/msg00537.html An example: library(ape) set.seed(5) x <- matrix(rnorm(100), ncol=10) p <-

I am trying to use the cca/rda/capscale functions in vegan to analyse genetic distance data ( provided as a dist object calculated using dist.genpop in package adegenet) with geographic distance partialled out ( provided as a distance object using dist function in veganthis method is attempting to follow the method used by Geffen et al 2004 as suggested by Legendre and . FORTIN (2010). I

Hi list, The function is.integer tests if an object is of type integer: see e.g.: is.integer(12) # FALSE is.real(12) # TRUE mode(12) # "numeric" But how can I test if a number is actually an integer? R seek is difficult to search in this case because it mainly yields entries about the integer()-function family. Thanks for any hint! Christoph Heibl

Hello, This must be simple... Thanks a lot - Christoph # Imagine you have a list, e.g: K <- list(1:10, 2:11, 9:18) K # Transforming to dataframe... KK <- as.data.frame(K) # ... one obtaines the list elements as column. KK # But I need the list elements as rows # How can I achieve this? Is there a simple way to transpose data.frames?

Hi Daniel, I mean "*As a set*, B + C dominate D". On Tue, Apr 25, 2017 at 5:42 PM, Daniel Berlin <dberlin at dberlin.org> wrote: > When you say collectively, you mean "would dominate it if considered a > single block together? > > IE > > A > / \ > B C > \ / > D > > As a set, B + C dominate D. > > The set you are

On Tue, Apr 25, 2017 at 6:32 PM, Daniel Berlin <dberlin at dberlin.org> wrote: > > > On Tue, Apr 25, 2017 at 6:17 PM, Hongbin Zheng <etherzhhb at gmail.com> > wrote: > >> Hi Daniel, >> >> I mean "*As a set*, B + C dominate D". >> >> On Tue, Apr 25, 2017 at 5:42 PM, Daniel Berlin <dberlin at dberlin.org> >> wrote:

Hi, Is there any way to quickly test if a set of basic block collectively dominate another basic block? Thanks Hongbin -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20170425/b9336a6d/attachment.html>

Hi Daniel, Thanks a lot for all these explanation, I will try it out. Hongbin On Tue, Apr 25, 2017 at 7:04 PM, Daniel Berlin <dberlin at dberlin.org> wrote: > > > On Tue, Apr 25, 2017 at 6:42 PM, Hongbin Zheng <etherzhhb at gmail.com> > wrote: > >> >> >> On Tue, Apr 25, 2017 at 6:32 PM, Daniel Berlin <dberlin at dberlin.org> >> wrote:

Like I said, i'm nearly positive there is a much faster way, as the sets are mostly shared except in the cyclic case, and in all reducible cyclic cases, removal of back-arcs does not affect dominance (because in any reducible flowgraph, v dominates u whenever u,v is a back-arc) On Tue, Apr 25, 2017 at 7:38 PM, Hongbin Zheng <etherzhhb at gmail.com> wrote: > Hi Daniel, > >

Dear RRRRRrrrrrrrrlist! I?ve got two lists which contain sets of DNA-sequences. They look something like this: List of 33 $ Cunonia_atrorubens : chr [1:247] "t" "t" "n" "t" ... $ Cunonia_balansae : chr [1:254] "t" "c" "c" "c" ... $ Cunonia_capensis : chr

Hi folks, For the past month I’ve been working on improving the DominatorTree and PostDominatorTree in LLVM. The RFC that explains the motivations and plans can be found here: http://lists.llvm.org/pipermail/llvm-dev/2017-June/114045.html . Here’s a short summary of what changed upstream since posting it: - We switched from the Simple Lengauer-Tarjan algorithm for computing dominators

Estimada comunidad, tengo un problema que no puedo resolver. Tengo muchos archivos (los llamaremos "TMP") con los que debo construir un archivo resumen que llamare "DAT". A partir de los nombres de los archivos TMP construyo las primeras 4 columnas de DAT, luego, con datos del interior del archivo TMP construyo las columnas 5 a 9 de DAT. El problema insoluble que tengo es que

************** try script like this works fine for me HOSTS=`/usr/local/samba/bin/smbstatus -b | tail -n +5 | cut -c19-26` for PC in $HOSTS do cat $1 | /usr/local/samba/bin/smbclient -M $PC done ************** Peter Lingen Tel.: +49 2166 27 2646

Is it possible to use DTrace to display the number of arguments and their types for userland or kernel functions that are not explicitly instrumented or documented by their authors? We''re talking about functions provided by Veritas VxVM/VxFS and the like, and for example, we might want to try tracing I/Os from App => VxFS => VxVM => ssd driver to see where I/Os get aggregated or