similar to: Namespaces of imported packages

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Dear List I just downloaded and installed R 2.12.0 and then installed R Commander . First it got RCmdr and Car, and then suggested for other packages for utilizing the full functionality- I clicked yes! I got 140 packages installed!!! Cran Mirror was UCLA... Here is the list. Is this intentional- I can see some packages like snow and multicore which are desirable but quite optional.(see list

Hello all, I am trying to port the package RProtoBuf to windows. The developers of RProtoBuf have given me some helpful pointers so far, but now I am stuck. After having made what I think are the necessary changes to the package to compile on windows, "R CMD build RProtoBuf" outputs a somewhat cryptic error ("This application has requested the Runtime to terminate it in an unusual

Hi, After the recent r-base and r-base-core alpha releases in sid, some packages fail to load, e.g. r-cran-bitops: R> library(bitops) Error in library(bitops) : package ?bitops? does not have a NAMESPACE and should be re-installed I suppose these errors will get fixed after 2.14.0 is released. In the meantime, should we just downgrade r-base and r-base-core to the testing versions?

> This can be considered good news. You have just successfully performed > the job that is normally done by R CMD SHLIB when installing source > packages or running inline C++ code. The environment variables, at > least inside your running R session, are completely fine. > > Now we need to find out why R CMD SHLIB itself fails without producing > any output. Do you get any

? Thu, 31 Aug 2023 14:01:54 +0000 Christophe Bousquet <chr_bousquet at protonmail.com> ?????: > So when I run the commands, I get this output. I honestly have no > clue whether this can be considered as something useful or not :-/ > > ``` > > tools:::.shlib_internal(c('-n', 'hello.c')) > make cmd is > make -f

Running R 2.13.1 on Windows XP. I would like to get week of the year (1-52) for each date. library(chron) dts <- dates(c("02/27/92", "02/27/92", "01/14/92","02/28/92", "02/01/92")) dts dts.chron <- as.chron(dts) dts.chron class(dts.chron) # all of these component extractions work: months(dts.chron) weekdays(dts.chron) years(dts.chron)

Hi list, I have some questions regarding 1) conversion of date + time characters to chron 2) formatting chron object printing Regarding (1), Gabor's Rnews 2004 4/1 article has been indispensible, but I often work with files where dates and times are contained in a single field. In this case, I would like to control input/output of chron objects when each observation of date and time is

Hello R users, I have to import a file with one column containing dates written in French short format, such as: 7-d?c-07 11-d?c-07 14-d?c-07 18-d?c-07 21-d?c-07 24-d?c-07 26-d?c-07 28-d?c-07 31-d?c-07 2-janv-08 4-janv-08 7-janv-08 9-janv-08 11-janv-08 14-janv-08 16-janv-08 18-janv-08 There are other columns for other (numeric) variables in the

My sessioninfo is below and I have two questions about loading packages in R : #======================================================================= ============================================================= R version 2.4.0 (2006-10-03) i686-pc-linux-gnu locale: C attached base packages: [1] "datasets" "methods" "utils" "stats"

Full_Name: Rick Bilonick Version: 1.6.0 OS: Linux (RH 7.1) Submission from: (NULL) (12.4.226.1) Hi. I'm using Red Hat 7.1 Linux (Intel 586). I installed the 1.6.0 rpm. No problems were reported. When I tried to load the chron library: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/usr/lib/R/library/chron/libs/chron.so":

Dear, According to the documentation, the parameters given in "dates" are passed to the function "chron". When trying this out, it turns out that this apparently doesn't happen, eg: > dates("20100101",format="Ymd",out.format="day mon year") [1] 01/01/10 > chron("20100101",format="Ymd",out.format="day mon

Kurt, Uwe suggested I write to you as maintainer of chron ... at the start of is.weekend, in the check on the argument type, maybe just change chron() to as.chron()? This would ensure as.chron.POSIXt gets called on POSIXt arguments, and (I think) fixes the problem. I tested and it seems ok. No warning/error required. > is.weekend function(x) { if(!inherits(x, "dates"))

I am troubled by what appears to be a glitch in the current distribution, or in its installation on our system. I've traced it, and found a work- around. Is this normal? Is there a cleaner solution? The problem: During a package installation, the warning message "WARNING: ignoring environment value of R_HOME" from line 31 of <R_HOME>/bin/R is accidentally spliced into the

I built R 2.2.0 from source on my debian machine yesterday and updated all packages. My problem is that "dates" function from its, that my code heavely uses is now masked by "dates" from chron. How can I specify tehat I want to use dates from its or how can I prevent it from being masked? > library(its) Loading required package: Hmisc Hmisc library by Frank E Harrell Jr

Hi! I encountered some things trying to build own packages under Windows 2000 for which i found no answer in the documentation. First. 1. I do not found the rcmd.exe in the bin directory of R_HOME. I installed R using the setup.exe 2. I updated the R intatllation with one of the zip files. (rw1041sp.zip) now i had the rcmd.exe in the bin. 3. I do not found any hint in the docu that perl is

I'm trying to install packages in Gentoo Linux using install.packages(). The packages download fine, but when it comes to installation, I get this message: WARNING: ignoring environment value of R_HOME /var/tmp/portage/R-1.5.1/image//usr/lib/R/bin/Rcmd: /var/tmp/portage/R-1.5.1/image//usr/lib/R/bin/Rcmd: No such file or directory I have the R_HOME set to the correct value (/usr/lib/R), but I

Hello, I have questions while reviewing "chron" package(e.g.,chron.R). 1. What is the differences between 3 kinds of function definition ? 1) "name" &lt;- function(... 2) 'name' &lt;- function(... 3) name &lt;- function(... Do you know Why author used various kinds of definitions ? Is there no functional differences between them ? 2. I

I would like to include this in a package. The S3 methods on R CMD check says * checking S3 generic/method consistency ... WARNING window: function(x, ...) window.chron: function(data, day1, hour1, day2, hour2, ...) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. I have looked and can not figure it out. This function is for convience. What

Hi, all. I was trying to build my R package with R 2.15.1 32bit and win7. I basically follow the routine in Steven Mosher's blog http://stevemosher.wordpress.com/step-10-build/ After I fixed the path, and built the skeleton of the package, I started command prompt and used the following commands in building my package Rcmd check myPackageName Rcmd build myPackageName Rcmd check