similar to: Changing a plot

Doing a visual graphic and trying to make it "pretty" Here's simple chart to play with: library(rgl) dotframe<-data.frame(x=c(0,7,0,0,-7,0),y=c(0,0,7,0,0,-7),z=c(7,0,0,-7,0,0)) dotframe plot3d(dotframe$x,dotframe$y,dotframe$z, radius=3, type='s',col=c('red','green','blue','purple','orange','gray'), axes=FALSE, box=FALSE,

Hello, Does anyone know how to make "movies" in R by making a sequence of plots? I'd like to animate a long trajectory for exploratory purposes only, without creating a bunch of image files and then using another program to string them together. In Splus I would do this using double.buffer() to eliminate the flickering caused by replotting. For instance, with a 2-D trajectory

Dear all I have tried to estimate the confidence intervals for predicted values of a nonlinear model fitted with nls. The function predict gives the predicted values and the lower and upper limits of the prediction, when the class of the object is lm or glm. When the object is derived from nls, the function predict (or predict.nls) gives only the predicted values. The se.fit and interval aguments

Hi, I'm new here. This question concerns the package rgl. Is it possible to change the colour of a set of points drawn with plot3d /without/ removing them from the scene? The idea is to create a presentation of a clustering algorithm, step by step, representing the currently assigned cluster by a colour. Removing all the points with "rgl.pop" and replotting them at each step

Hello, Can anyone suggest a simple way to generate a Kaplan-Meier plot with 2 survfit objects, just like this one:? https://drive.google.com/file/d/1fEcpdIdE2xYtA6LBQN9ck3JkL6-goabX/view?usp=sharing Suppose I have 2 survfit objects: fit1 is for the curve on the left (survtime has been truncated to the cutoff line: year 5), fit2 is for the curve on the right (minimum survival time is at the

Hello All, My question is regarding the attached plot. I would like to have multiple transparent green bands running the length (yaxis) of the plot the width of which is determined by the green lines at y=0 in the plot. Can you suggest a way to do it? For those who can't or are unwilling to download the file the plot is at http://www.twitpic.com/ma8w0 Thanks!

Hi all, I would like to ask your help to add a color band (Ι am not sure regarding the right term, this color band at the right of the plot "describing" values with their corresponding color. For now I have only this code test<-matrix(data=runif(10000),nrow=100) plot(test,axes="FALSE") axis(1,at=c(0,1),labels=c("a","b")) # but  I would like to add

Dear fellow R users, I would like to draw a "sunflowerplot" because I have data (decade by month) that plots multiple times on the same x-y co-ordinates. Further I would like to colour each of the points/sunflower leaves on the plot according to the group they belong to (i.e. which type of event each represents within that decade and month). I thought that this would be relatively

I have a figure on screen with a legend. I want to copy this image to EPS, and use: dev.copy2eps(file="file1.eps", width=5, height=5) The legend that looks OK on screen doesn't look OK in the PostScript image: the text extends out of the box. I try adding a fontsize command: dev.copy2eps(file="file1.eps", width=5, height=5, pointsize=5) This options seems to

Dear R users, I need a produce a plot with a single panel and a few lines on it. Each line represents a different data set. The line types must be "h", i.e. ?histogram? like (or ?high-density?) vertical lines. The problem is that the vertical lines comprising a plot line of type="h" are drawn from the y=0 line to the (x, y) locations. What I need is vertical lines drawn from

Hello. My name is Akashah. i work at metabolic laboratory. From my study, i found that volcano plot can help a lot in my section.  i already studied about the volcano plot and get the coding to run in R software, unfortunately, there is may be something wrong with the coding. This is because  no graph appear, but no error (blue color text) was shown on the R console. Below is the coding for

I am setting up base plots -- one in viewport A and and one in B. This part works fine. But if I go back to A after having done B and add horizontal lines it seems to not use the correct coordinates. How do I tell it to resume using A's coordinates? I am already using par(fig = gridFIG()) but it seems that that's not enough to reestablish them. What happens is that when I go back to

I am setting up base plots -- one in viewport A and and one in B. This part works fine. But if I go back to A after having done B and add horizontal lines it seems to not use the correct coordinates. How do I tell it to resume using A's coordinates? I am already using par(fig = gridFIG()) but it seems that that's not enough to reestablish them. What happens is that when I go back to

Dear All- I am trying to create a legend where the first 9 terms are represented as pch=16 in one column (which I am able to do); but, I would like the last two terms in that column to be 'lines" (which are black and red - just as it looks like in the plot). I have read through many help pages and searched the help listserv, but haven't figured this one out yet. Does anyone have

HELLO, anybody... could you help me to check the below coding for volcano. what is the mistake? what the plot could not display? # volcano_plot.r # # Author: Amsha Nahid, Jairus Bowne, Gerard Murray # Purpose: Produces a volcano plot # # Input: Data matrix as specified in Data-matrix-format.pdf # Output: Plots log2(fold change) vs log10(t-test P-value) # #

Hello, I am new to Asterisk and new to this list. I got Asterisk setup and running using Asterisk@home, and purchased a PolyCom SoundPoint IP500 phone to test out. I cannot get the phone to talk to the Asterisk box. On bootup of the phone, it tells me that it cannot contact boot server. Why is that? It gets an IP fine, and I have also tried manually setting the IP of the phone and the Asterisk

Dear List, I have a richness data distributing across 20 N to 20 S latitude. (120 E-140 E longitude). I would like to draw the richness in the north hemisphere and a regression line in the plot (x-axis: latitude, y-axis: richness in the north hemisphere). The above demand is done using plot. Then, south hemisphere richness and regression are required to be generated using the same y-axis above

hi R gurus I saw some graphs with vertical band like this one: http://pragcap.com/wp-content/uploads/2010/04/GS.png how to draw the blue band in R, can't find any clue to do this,any ideas? thanks in advance [[alternative HTML version deleted]]

Dear All, I am newbie to R, and I wanted to plot a barplots with R and in such a way that It will also show me position which I can plot on the bar line. Here is my code that I am using to plot, > chromosome <- c(40.2, 35.6, 36.1, 29.6, 31, 29.6, 31, 29.4, 28.2, 23, 23, 28.2) >barplot (chromosome, col="purple", xlab="Oryza sativa Chromosomes", border = NA, space =

Hola Neo, esto es lo mejor que me ha salido. A ver si por lo menos te ayuda. Un saludo colores<-c("black", "green", "red", "steelblue", "purple") #creamos el vector de 5 colores que usaremos para unificar luego la leyenda y el grafico xyplot(V5 ~ dia | sol, groups=con, layout=c(1, 3), type= "l", pch=1,